RnoINT0121139 @ rn6
Intron Retention
Gene
ENSRNOG00000015807 | Pyroxd2
Description
pyridine nucleotide-disulphide oxidoreductase domain 2 [Source:RGD Symbol;Acc:1303232]
Coordinates
chr1:261969008-261969627:-
Coord C1 exon
chr1:261969486-261969627
Coord A exon
chr1:261969143-261969485
Coord C2 exon
chr1:261969008-261969142
Length
343 bp
Sequences
Splice sites
5' ss Seq
AAGGTGTGA
5' ss Score
4.59
3' ss Seq
ATCTCGTGCTGGGGCTCCAGACT
3' ss Score
2.36
Exon sequences
Seq C1 exon
GTATGTGCTGCTACATCATGTGATGGGCAGCCTGGAGGGGATGCAGGGTGCCTGGAGCTATGTCCAGGGTGGCATGGGTGCCCTCTCAGATGCCATTGCAAGCTCGGCTACTGCACATGGAGCAAGTATCTTCACAGAGAAG
Seq A exon
GTGTGAGCCCCTCTCCCCAACCCCGACTGTTAGCCTGGATGCAGGGTGGAGGGTGGGACAGCCTCAGATTCGGACAGACCCTTGAATTACTGATGAACCAAGTGAAGCCCAGAATCCAGGCTCTCGCTTCTGAAACTGGTCAACCTTTCAAGTTCACCAGTCACAAAACCACGCATGGGGCTGTGCTCCCTGGTGGGCAGGTTGCACCAGCGCACCCCGAGGAGCCCCTGGCTTGGAGGATGGGTTGGGGATAAAGAAGTATGGGTGCCTAGGAACCGCACCCACTATTCTCAACCTGGGCCTCCTTCTGGGGGACTTCGGGGATCTCGTGCTGGGGCTCCAG
Seq C2 exon
ACTGTGGCTAAGGTGCAAGTGAACAGCGAAGGCCGTGTCCAAGGGGTCGTGCTGCAGGGCGGCGAGGAGGTCAGGAGCAGAGTCGTCTTGTCCTGTGCGTCGCCACAGGTCACCTTCTTAGAGCTGACACCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015807:ENSRNOT00000021257:9
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGCTGCTACATCATGTGAT
R:
TGGTGTCAGCTCTAAGAAGGTGA
Band lengths:
271-614
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]