HsaALTD0005338-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000076067 | RBMS2
Description
RNA binding motif, single stranded interacting protein 2 [Source:HGNC Symbol;Acc:9909]
Coordinates
chr12:56961850-56962817:+
Coord C1 exon
chr12:56961850-56961950
Coord A exon
chr12:56961951-56961970
Coord C2 exon
chr12:56962759-56962817
Length
20 bp
Sequences
Splice sites
5' ss Seq
GGGGTCAGT
5' ss Score
3.99
3' ss Seq
TGCATTTTCCTCTCCCTTAGATA
3' ss Score
10.24
Exon sequences
Seq C1 exon
ATGATGAGGCTGAGACACCAAAAGGTTCAATGACTTGTTCAAGATCACGCATAGCTAAAAAGTGGCAGAACCAGGATTTGAACCAAAGCAATTTGGCTCAG
Seq A exon
GTTGACCTTCAATTAAAGGG
Seq C2 exon
ATATGGCAAGATTGTTTCCACTAAGGCCATACTGGACAAGACCACAAACAAATGTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000076067-6-6,7-6-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0007617=RRM_1=FE(29.9=100)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCACGCATAGCTAAAAAGTGGCA
R:
GTGGTCTTGTCCAGTATGGCC
Band lengths:
102-122
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)