HsaALTD0005434-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000164068 | RNF123
Description
ring finger protein 123 [Source:HGNC Symbol;Acc:21148]
Coordinates
chr3:49726939-49728680:+
Coord C1 exon
chr3:49726939-49727039
Coord A exon
chr3:49727040-49727255
Coord C2 exon
chr3:49728563-49728680
Length
216 bp
Sequences
Splice sites
5' ss Seq
GGAGTAGGT
5' ss Score
3.34
3' ss Seq
AGGCTCTGTGTCTGGCTCAGCCC
3' ss Score
4.26
Exon sequences
Seq C1 exon
GCTCAGCGCGCAAGCGTGCGCGTGATTTGGCCCTGAACGGACGCCGTAGCCAAGAGGTTGGGCGGATGTTGTGAGCCGGGTCGCTGCGGCCGAGGCTCCGG
Seq A exon
GTGAGTGAGGGGCGGCAGGGCTCTGAGCCTGGCGGGTTCCGGCTATTCCCTTCGCGGTCCGGGCTAGTCCAGTGCGAGGGCACCTGCAGCGCAGGGATCTGGGTGCGAAACTCCGAGCGGAAGCTGGTCTGGCAGGTCCTGTGGAGCTTGGGGCCAGGCGGGGGCGACTTGGGGGAGCCATGCGCCGCCCTCGCCGTCCTTGGGCTCCCAGACGGA
Seq C2 exon
CCCCCAGGACCACTGGCTGCCCATGAGAGATGAAGGATGGCATCCAAGGGGGCCGGCATGTCTTTCTCCCGCAAGAGCTATAGGCTGACCTCAGATGCTGAGAAATCCAGGGTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164068-0-0,1-0-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.077
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCGCGTGATTTGGCCC
R:
CTGTGACCCTGGATTTCTCAGC
Band lengths:
204-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)