HsaALTD0005435-2/3 @ hg19
Alternative 5'ss
Gene
ENSG00000164068 | RNF123
Description
ring finger protein 123 [Source:HGNC Symbol;Acc:21148]
Coordinates
chr3:49742520-49743112:+
Coord C1 exon
chr3:49742520-49742606
Coord A exon
chr3:49742607-49742615
Coord C2 exon
chr3:49742967-49743112
Length
9 bp
Sequences
Splice sites
5' ss Seq
ACAGTAGGT
5' ss Score
5.67
3' ss Seq
TTCCCTCCCCAACTCCCCAGTTG
3' ss Score
8.02
Exon sequences
Seq C1 exon
CGGCTGTGAGCCTCATGACCCCACGGCGGCCTCTGAGCACCTCGGAGAAAGTGAAGGTCCGCACGCTGAGCGTGGAGCAGAGGACCC
Seq A exon
GTGAGGACA
Seq C2 exon
TTGAAGGCAGCCACTGGAATGAGGGCTTGCTGCTGGGGCGGCCCCCCGAGGAGCCTGAGCAGCCCCTCACCGAGAACTCGCTGCTGGAAGTCCTGGATGGGGCGGTCATGATGTACAACCTCAGCGTACACCAGCAGCTGGGCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000164068-27-27,28-27,29-27-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.473 A=NA C2=0.492
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGAGCCTCATGACCCCA
R:
CATTCCAGTGGCTGCCTTCAA
Band lengths:
105-114
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)