HsaALTD0005615-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000124782 | RREB1
Description
ras responsive element binding protein 1 [Source:HGNC Symbol;Acc:10449]
Coordinates
chr6:7108264-7177006:+
Coord C1 exon
chr6:7108264-7108293
Coord A exon
chr6:7108294-7108297
Coord C2 exon
chr6:7176888-7177006
Length
4 bp
Sequences
Splice sites
5' ss Seq
TAAGTACGT
5' ss Score
5.1
3' ss Seq
ACCTTTTCTTATTTTTGTAGGTT
3' ss Score
11.15
Exon sequences
Seq C1 exon
ATGCCAGGGAGCCAAGCGTCCTGCCCGGCC
Seq A exon
GTAA
Seq C2 exon
GTTGCTCCGACTGTGTGTTCCAGGAGTGGTGGCTCTGAGGTGTGACCCTGCCCACGTTTGGGCCCAGCCAGGTTCAGCCCCCCAATAAGGAGGGCAGCTTGATAACACAAAGAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000124782-1-11,2-11-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGGAGCCAAGCGTCCTG
R:
GGGCTGAACCTGGCTGGG
Band lengths:
105-109
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)