HsaEX0055738 @ hg19
Exon Skipping
Gene
ENSG00000124782 | RREB1
Description
ras responsive element binding protein 1 [Source:HGNC Symbol;Acc:10449]
Coordinates
chr6:7108041-7177006:+
Coord C1 exon
chr6:7108041-7108293
Coord A exon
chr6:7140881-7141041
Coord C2 exon
chr6:7176888-7177006
Length
161 bp
Sequences
Splice sites
3' ss Seq
CTGCCCCTCCGATCCAATAGGTT
3' ss Score
8.62
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
GAAGCTGGGCGGGGGGCCGAGACGGGGGCCGGGACGACGGCTGGGGCGCCGGGGTCGCCAGCTCCTCGCCCACCTCCCTCCCTGTGGGAGAAGAGGAGGAGGGGAAGTGACTGCGGAGTTGATGAACTTTGCACATCCAGAAACGCCATTTTGATTCCTTTTCCGGAACAAGTTTGCATCTCTCCTCGGTCTCTCCCTGAAGCCCACCGGTCCCCAACGCATCATGCCAGGGAGCCAAGCGTCCTGCCCGGCC
Seq A exon
GTTTGAAGCCGCTGGTCCTCGCCTTTTACTCCTTAGCTGGACAGCGGGTTCGGGATCTGCCCCATGACTAAGGCTGAAGTGGAAAGTTGCGAAGATAGAACAAGAGTTGTTCCTTAGGGTGGTGTCCCTAAACTTGAAAGTGGACTTGGTCCTGCTCGCAG
Seq C2 exon
GTTGCTCCGACTGTGTGTTCCAGGAGTGGTGGCTCTGAGGTGTGACCCTGCCCACGTTTGGGCCCAGCCAGGTTCAGCCCCCCAATAAGGAGGGCAGCTTGATAACACAAAGAAAACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000124782_MULTIEX1-1/6=C1-2
Average complexity
S
Mappability confidence:
88%=100=88%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAGTGACTGCGGAGTTGAT
R:
CAAGCTGCCCTCCTTATTGGG
Band lengths:
252-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)