HsaALTD0005628-3/3 @ hg19
Alternative 5'ss
Gene
ENSG00000174891 | RSRC1
Description
arginine/serine-rich coiled-coil 1 [Source:HGNC Symbol;Acc:24152]
Coordinates
chr3:157827945-157840087:+
Coord C1 exon
chr3:157827945-157827986
Coord A exon
chr3:157827987-157828012
Coord C2 exon
chr3:157839892-157840087
Length
26 bp
Sequences
Splice sites
5' ss Seq
CAGGTGATG
5' ss Score
5.99
3' ss Seq
CTTCAAATTTATGCTTATAGAAA
3' ss Score
4.52
Exon sequences
Seq C1 exon
AGAAACGACTCAGGGACTGCGGCGCTTGCACGTCAACGGGAG
Seq A exon
GTGTGAGCCCAAAGGTCTGGACCCAG
Seq C2 exon
AAATGGGACGTCGGTCATCAGATACTGAAGAAGAAAGCAGAAGCAAGAGAAAAAAGAAACACCGTAGACGGTCCTCCTCGAGCAGTTCTTCAGATAGTAGAACATACAGCCGAAAGAAAGGAGGAAGGAAATCAAGATCAAAGTCAAGATCTTGGTCCAGAGATCTTCAGCCTCGTTCACATTCTTATGATAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000174891-2-10,3-10,4-10-3/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)