MmuALTD0012273-2/2 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000034544 | Rsrc1
Description
arginine/serine-rich coiled-coil 1 [Source:MGI Symbol;Acc:MGI:1914130]
Coordinates
chr3:66985704-66994712:+
Coord C1 exon
chr3:66985704-66985782
Coord A exon
chr3:66985783-66985806
Coord C2 exon
chr3:66994517-66994712
Length
24 bp
Sequences
Splice sites
5' ss Seq
CAGGTGATG
5' ss Score
5.99
3' ss Seq
TCTTTATTGTACTCTTACAGAAA
3' ss Score
9.17
Exon sequences
Seq C1 exon
AGCTTAAATTGAAGCAAGTTCTGAGGACGCCGGTGGCGCCGTGGTTAGAAGAGGGGGTTCCAGGTCCCCACGTCGGGAG
Seq A exon
GTGCGAACCCGAAGGTCGAGCCAG
Seq C2 exon
AAATGGGACGCCGGTCTTCAGACACTGAAGAGGAAAGCAGAAGCAAGAGGAAAAAGAAACACCGGAGGCGCTCGTCTTCAAGCAGCTCTTCAGACAGCAGGACATACAGCCGCAAGAAGGGCGGGAGGAGGCCGAGGTCCGACTCAAGGTCCTGGTCTAGAGACCGCCAGCTTCGCTCGCATTCTTATGAGAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000034544-1-11,2-11-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=1.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCGTGGTTAGAAGAGGGGGTT
R:
CGCCTCCGGTGTTTCTTTTTC
Band lengths:
111-135
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types