HsaALTD0005706-5/5 @ hg38
Alternative 5'ss
Gene
ENSG00000144306 | SCRN3
Description
secernin 3 [Source:HGNC Symbol;Acc:HGNC:30382]
Coordinates
chr2:174395717-174398442:+
Coord C1 exon
chr2:174395717-174395817
Coord A exon
chr2:174395818-174396293
Coord C2 exon
chr2:174398275-174398442
Length
476 bp
Sequences
Splice sites
5' ss Seq
TTGGTAAAA
5' ss Score
3.23
3' ss Seq
AACATCTGTATAATTTTTAGTTA
3' ss Score
5.41
Exon sequences
Seq C1 exon
GGGAACTTCCGAGATCAAAGGTGACAGCTTCCGGCAACTGATGCCTCCACTGGCCACTCCTCCCTCCGTCCACCTGTCACTTCGGGTAGCTGGGAGGCCAG
Seq A exon
GTGAGGGGCGCGCACGGGGGAGGGGCGTGCATAGTTGAGACAGAAACCCGGAAGACCCAACTGTGGCGCGGCACTGCTTGACCGAGGGGCTCCGGAGCCCAGCTGCACCGGCTGCGGTTTGAGCGCCCAGGGCCGGGGTGCGGGGTGGACCGCGGCGGCCCTTCGACCAAAGGTGCTTGAAGCTCGAGCCCATTACTTTCTGTGGACTCTGACTCGAGCTGCAAAAGCTTTTCTGCACTGTTTTTCTCATCTATGTTATGAAGATAATAATTCCGGCCCTAACCGTAGTATGCTTGCGAGAATCCAACAATATGATGTTTCTGAAAGCGCCGGCTGAACTAAGAGCGCGTGAAATAGAATGACAGACAGCTCTGCAAGAACGGAGGCCCTGTCTATTTTGTACCCAGCTGTACGGTACTGGCGCCGAAAGACGTTCAATAAATACTTATTGAATGACGAATACGCGTTAGGAGTTG
Seq C2 exon
TTAAAAAAAATGGAACCTTTTTCCTGTGACACTTTCGTGGCATTACCTCCAGCAACAGTCGATAACAGGATTATTTTTGGAAAAAATTCAGATAGACTCTATGATGAAGTACAAGAGGTGGTTTATTTTCCTGCTGTAGTTCATGATAACCTGGGAGAACGTCTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144306-0-2,1-2,2-2,3-2,4-2-5/5
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.524 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0357710=Peptidase_C69=PU(17.8=90.6)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCCGAGATCAAAGGTGACAGC
R:
CTTAAGACGTTCTCCCAGGTT
Band lengths:
262-738
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains