HsaINT1041049 @ hg38
Intron Retention
Gene
ENSG00000144306 | SCRN3
Description
secernin 3 [Source:HGNC Symbol;Acc:HGNC:30382]
Coordinates
chr2:174395745-174398442:+
Coord C1 exon
chr2:174395745-174395817
Coord A exon
chr2:174395818-174398274
Coord C2 exon
chr2:174398275-174398442
Length
2457 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
AACATCTGTATAATTTTTAGTTA
3' ss Score
5.41
Exon sequences
Seq C1 exon
TTCCGGCAACTGATGCCTCCACTGGCCACTCCTCCCTCCGTCCACCTGTCACTTCGGGTAGCTGGGAGGCCAG
Seq A exon
GTGAGGGGCGCGCACGGGGGAGGGGCGTGCATAGTTGAGACAGAAACCCGGAAGACCCAACTGTGGCGCGGCACTGCTTGACCGAGGGGCTCCGGAGCCCAGCTGCACCGGCTGCGGTTTGAGCGCCCAGGGCCGGGGTGCGGGGTGGACCGCGGCGGCCCTTCGACCAAAGGTGCTTGAAGCTCGAGCCCATTACTTTCTGTGGACTCTGACTCGAGCTGCAAAAGCTTTTCTGCACTGTTTTTCTCATCTATGTTATGAAGATAATAATTCCGGCCCTAACCGTAGTATGCTTGCGAGAATCCAACAATATGATGTTTCTGAAAGCGCCGGCTGAACTAAGAGCGCGTGAAATAGAATGACAGACAGCTCTGCAAGAACGGAGGCCCTGTCTATTTTGTACCCAGCTGTACGGTACTGGCGCCGAAAGACGTTCAATAAATACTTATTGAATGACGAATACGCGTTAGGAGTTGGTAAAATCTCTCAAGGCTTCACCTCCTCAGTGGGCTAGGTGCAATTCTAACCAGGGGGCAAGTTTCCTTAGCTTTCCCTACGACCCCAGTTAGGCAGCTCAGGTTACTATTGCAGCTTGATGGCCCTTGGGACTCCAGGTTTTTGAGTGGACGTGGCTGCTACTGCAGCAGGTGATCCACCAACCAAGTTCTCTATCAGGGTAATGTTAAGAATAAACCTTGGCCGGGCGCGGTAGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGGGTGGATCACCTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAACACGAAAAATTAGCCGGGTGTGGTGGCACGCGCCTGTAATCCCAGCTACTCGGGAGGTTGAGGCAGGAGAATCACTTGAACGCGGGAGGCGGAGGTTGCAGTGAGCCAAGACTGCTCCATTGCACTCCAGCCCGGGCAACAAGAGTTAAACTCCATCAAAAAAAAAAAACAAAAAACGAATAAGCCTTTATGAGAAATTTTCTCTCCTACCAAATAATAACAATAACAGCTTTCATGTGAGTATCTACTATGTTCTATGCACTGTGCAAAACACTTTACGTGTTGCCTTATTAAGTTCTCATAACAGCCCATCAAATAGTGTCTTATTTTTCTGATGAGGCAGAAGGCATAGGTAAGAGAGAGATTAAATAGTCTGCCAAAGTTATATAGTGATAGAACTAACTATAAAACACAAATAGAAGGAGATCCAGGACATAAGAGTTGAAATACAGAAAGAAAATAACAGAAGCCATCAAGACATCAGACTTCTCGTCACTGAGGAGAAGAGGAAAACCCTTAAGAGTTTCAGTCTGAAGTTTTTATTTAGTCATTTTCTTTTCTTTTTAAGGAAACATTTATTATATTTAAATTTTGTTTTTAAGTTGCTAGCATCTGCCTGTGTAAAGCCATTTTAAGGTTTTGCCATTATTAAAGGAAAGAAGGAAACTCTGTAAAACAATGTGTCTGTTCTGGCAGCAAAATAAGGACCTTTAGGTGTTCTATTATAAGTGAAGATCTAAGATTTTCCAAGTTACAACTGAAGAGGTAATCTAGATATTAAAGTATATAATTGCGATTTATAAATTAAATATGTGAACTTTCTCCTAGAAATATCAGCAATTTGGAATTATATTGACATATTTTTGTCTGAATCAATGAGTCTGTTTCAAAATTTCAGTCTCATCAGAATTATAATGTGTATTATTTCCCAGCTCAAATAAGACCCCTTCTTCCTTCCTTTGAGGAAGTACTGGGCACGTAAGATTTTTTTCCATAAGACAAGTTCCAGCAAAGAGAATATAAAGATTAGTAAGACATACTCCCAGCCCTCAAGGATCTCATTGTCCAGTAAAGGGATTTATATATACACGAATGTAATGGAATCTAGCCTTTACAACAATAGAGCTAGGTACACGGATTCCCAAATATGGAAATGGTGAAACGAAATTCAGGGAAGACTTTAGGAGAGAAAGGTCTTAGAGAATAAATGTGAACTATACAGTAGAAGAAGGTAGTTCTCATTGCCATTTTCTTACTGAGTTGTAGTACCAGATTGAGTCCCAAGTCATATTCTTACTGATTTTTAGGCTGTAGTATACAAAATTTAAAACTTTAATGAACAGCCAAGCACGGTCACTCATGCCTGTAATCCCAGGGCTTTGGGAGGCAGAAGGGGGAGGATCTCCTGAGCCCAGGAGTTCCAGGCTGCAGTAAGCCCTGATCATACAACTGCACTCCAGCCTGGGTGAAAGAGCTAGACCTTGTCTCCAAAAAATAAAAATAAAAAAATCAAAGCTTTAATGAACATCCTTAATTAGATATGGCAATAATATCCTTTGGTCATTGAGTAAAACTCTTTATTTTTATATACTTAAAAGTGTTCTTTTTATTTTAAAACATCTGTATAATTTTTAG
Seq C2 exon
TTAAAAAAAATGGAACCTTTTTCCTGTGACACTTTCGTGGCATTACCTCCAGCAACAGTCGATAACAGGATTATTTTTGGAAAAAATTCAGATAGACTCTATGATGAAGTACAAGAGGTGGTTTATTTTCCTGCTGTAGTTCATGATAACCTGGGAGAACGTCTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144306:ENST00000272732:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=0.524 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0357710=Peptidase_C69=PU(17.8=90.6)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains