RnoINT0131866 @ rn6
Intron Retention
Gene
ENSRNOG00000018657 | Scrn3
Description
secernin 3 [Source:RGD Symbol;Acc:1305064]
Coordinates
chr3:60024013-60026906:+
Coord C1 exon
chr3:60024013-60024059
Coord A exon
chr3:60024060-60026745
Coord C2 exon
chr3:60026746-60026906
Length
2686 bp
Sequences
Splice sites
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
3' ss Seq
CACTTTTTTTTTTTTTAAAGAAA
3' ss Score
7
Exon sequences
Seq C1 exon
GTTGCTTCTCGTCGCTGTTACCCGGCGTCCGCGCGTGCGCAGCAGAG
Seq A exon
GTAAGCTCAGGCGTCCGCTCTGCGCGTCGTTCGCACTCTGCAGGGTCGCGAGCGGCGGTGGGCTCTAGGGCGCCAGCATCGTTCTGAGCGCAGACGTCCCGAACAAGCGAGGTCTTGAAGTTCGAGCCCAGCACTTTCTGGCAACGTCGACTCCAGTTGCAAAATTTTTCTTTTGCGGCGCTGTTCCTATGTAGATAATGGAGATAGTTTTACGCCAACCGTAGGACGTTTGTGAGATTAGTGTTACCAAAAGCACGGGAATAGACTGAACCGAGGCTCTTCCTTTCCAATTACTGTTATTGTTTAATAATTGTTATTATTACTATGTATCTTTGATACGTGGTCTCGCCATATAGCGTTGGCTGTCCTTGACCTAACAGATCTGCCTGTCTTTCCCGACCCAGTGCTGGGATTAAAGGCCTGCGCCAATACACGCCTGCATTTGCCTCCCCAGTGCTGTAATTAAAGGCCAATACACGCAGCTTCCTTGGGTTATTTCTAGCTATGTGGAAATGTTCAGCAAAAATCGTGAATGATAAGAACCCGTTAGGGCCAAGTGCTTTCTTCCCTGAGCGCTGGTTTCTTAGTTGTTGCCGCCATCCCAGTTCGTGTAGGCAAGGGCATAGTCCACCGGTCTCTAGCGAGGATAAGAACACGCCAAATTACAACAGATGACAGCTTTCGTTTGGGAGTTGGCGGTGTTCCAGGAGTTTTATCGTGTGTTATTTGTGACTCAAAAGAAAAACAGTGATACCTCTTCCCATCTTTGAGATGGAGAAGACTCTTCACTTATTGTGTGATAGACTTGTTTCTTGAGTCATTTTGTTCATTTTGAAACATAGGGTAGCCTTAAACTCTAGTTCATTCTGCTGAGTGCTGAGATTACAGTGTGCTACCATATCCTGCTTTGTTTTGCTTTCAATAAAACATTTACTGTGTTTATATTTTTTTATTTTTCTTAAATAGTTAGAATGCTCCTCTATAAAACTGTGCTACAAATTGTTTCTTCTTGTTTGTTTTTCAAGACAGGGTTTCTCTGTGCAGCCCTGGGTGTCACTCTGTAGGCCAAAGATCTGCCTGCCTCTGCTTCCCAAGTTCTGGGATCAAAGGTGTGCACCACCATCCCCAGCAAGATTTGGTTCTTATAAAAGAAGGGAACTGGGTTAGAGAGCTCAGTGGTTAAGATAGCTCATTACTTTTCCCAAAGACTTCAGTTCAATTCCTAATACACAGGTGTGCTTGCACAATGCCTCACAACCTCTAACTCCAGGTCCAGGGCGTTTGAGGCCCACTTCTGACCTTCCAGGGCATCCCTATTCTTAGTAAACAGACATAAACTATACATACACATAAATAGTAAAAGTAAATCTTTAAAAGATAAATAAAAGAAGGAAACTAAAACTATGTCTGTTCTGAAAGCAAAATAAAAATAGGGGATCTTGAATGGTTCTACAAACTGGAATTTAAGATTTTCCAGATCACAGATGAAGAGAATTTGGATGTCAGTTCTACAGTCAGGATTTTTAAGTTATAAACATGAATTTCCTGAAAATATTATAAAGTTGGGGTTTTGTTTGTTTTTTGTTTTGTTTTGTTTTGCTTTTGAGACACTACTCCTGGCTGTCCCGGAACACAGGGCTAGCCTCAAACTCAGGGATCCACCTGCCTCTGCCCCCAACAGTGAGAATCTCATTGACATCTTTGTTGTATTTCTCCAAAGTACTGGGTCTGCTTCAGAATTTCTGTCTTGAACCCCAGGACAGAGTCAGGGCCAATGGAGAGAGGAGACCCAGACCAGATCTTTCCACAGCCCAAAGGAATGAAGTGGGGAGAGGTGCCCGAGAAAGCCTGTCACAGATGGCAGGTCACCAGCATCTGATAGAGTAATAAAGGGACTGACTCAGTGTGTACAGGGAAAAAAACTCTGTCTTTTCAATATTATAGTATCTATGTACATTTTTCCTCCTCTGAAGCAATATTGGGAACATTTGTTTGTTTACATAAGTTCCTTTTTGGTTTTTTTGGGGGGGTTGTTTGTTTGATTTTGGTTTTGTCATTGTTGGTTATGTTTGGGGGAAGGGCAGGGTTTCTCTATGTAGCCCTGGCTGTTCCTAGCACCTAGCATTTTGTAGACCAGGCTGGCCTCCAGCTCAAAGAGATTCACTGCCTCTGCCTCCGAACACCCGGGGTTAAAGGTGTGTACCACCACCACCCAACCTTTACACAATTTTCAATAGAAAAACTAACAAGAGGTCCTCCAGCTCTCAGGGGCTAGTAAGGGGCCTCATGCATACACAAAAACATGAACAGCTGTGGGCATAGTGAGAGGAATGGGGAGGATTCAAGAGAGAGGTTTATAGGGAACCTTGACCATAGACTACAAGAAAGTGGCTCTTACTGCCATGTTATCAAGAAGTACATGGTTAGTTGCTAAATCACAGTCTATCTTTTATAGTTTCTGTTATTTACTTGTTTAAGACAGGTCTTACTGTATTCACTTGGCTGCCCTGGAATGCGCAGAAAGAATATGATATGTAAAACGTCATTATATAAAACGTCATTATACTCCCTCCTTAGGTATATCCCTCGGTCACAAAGAAAAGCTCTTTGTTTTATGTGTACTTGAAAGTGTTTCCTCTTTTTATTTTGTAACCTGTATGTGCTTTCACTTTTTTTTTTTTTAAAG
Seq C2 exon
AAATGCAGCCCTATTCCTGTGACACGTTTGTGGCATTACCTCCAGCAACAGTTGGAAATAGGGTTATTTTTGGAAAAAATTCAGACAGACTCTTTGATGAAGTACAAGAAGTAATTTACTTTCCAGCTGCAGTTCATAGTGATCTGGAAAAACGTCTCAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018657:ENSRNOT00000025255:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0357710=Peptidase_C69=PU(12.9=60.4)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]