BtaINT0129701 @ bosTau6
Intron Retention
Gene
ENSBTAG00000012966 | SCRN3
Description
secernin 3 [Source:HGNC Symbol;Acc:HGNC:30382]
Coordinates
chr2:22429502-22432815:-
Coord C1 exon
chr2:22432742-22432815
Coord A exon
chr2:22429672-22432741
Coord C2 exon
chr2:22429502-22429671
Length
3070 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
AACTTCCATATGATTTTTAGTTA
3' ss Score
3.35
Exon sequences
Seq C1 exon
CGACTTCCGGCAACTAGCTCCTCTCCACCCTTTCTCACTCCTTTCCCCTTTCACTTGGGTAGCTCGGAGGCCAG
Seq A exon
GTGAGGGGCTTGCAGGGAGGGAGGGGCGAACGAGCCTAGTAGTTGTAGGAAGTAGGAAGCCCGGAACTGCGGAGCGGTCGTGGGGGCGGGGCGGGGGGGGGTGCTGGGGGCGGGGACTGAGTGGCTTCTGGGAGGGGCGCGGGCCAAAGCTGCGCAGTCCGCAGCCGTCTTGGGTGCTAAGTGTGTGGTGAGCGGCGGTCCTTTTTTTTGCAAGATGTTCTTGAAGTCCGAGCAGTTTATTCTGTGAACGCTGTTTTGAGTTACAGAAACTTGCCTGCACCGATTTTTCTCGTCTGTAGTAATTCTTGCCCTAACTGTAGCAAGTTTGTGAGGATCAAACGATGAAAGCTCTTGGTGAACTAAAGCATGTCAACTCCACAAGAGCGAAGACTCTAGTTTGTTACCAACTGTACGGCGCCTGGTGCAGAAAGATGTCCGTAAACATTTGTTAAATGATGACTATATTCTAGAAACCGGTTAGTAAAGCCTCTCAAGACTGCCGCTCCTAAGTGGGTTAGATGTCTTCATAATCAGGTGACCTGTTTTCTTAGCTTATTACCCTGGTTAGGTCAGATCACCTAGTGCACCTTGATGGCTCTTGAGATTCCAGGGTATTGAGGGTACGTGGCTGCTGCTGCTGTAGGTGATCCTTCAACCAATTCCTTTACCAGGATGACGTGACGTGTGATGTCAGGAGTAAACTTTTTGTGAGAAATGTACTCTTCTGACAAATAATAACAGAAACAGCGTTTATATAAGTGTCCGATATGTTCTATGCATTGTGCAAAACGTTTTACACATTGTCTTATTAAATTCTCATAACAACCCTTTGAGAGATTTACAGATGAGGCAAGAGGCTTAGATAGAGATTAAATAGCCTTGCCAAAGTTAGGCAGTGGTGGAACTAACTTTGGAACACATATAGAAGGCGATTTAGGACATGAAAATCACACGAAGGACTTCCCTGGTGGTCCATTGGTTAAGAATCCGCCTGCCACTGTAGGGGACACTGCTTCTGTCCTTAGTCCAGGAAGATTCCCCCATACTGCGGAGCGTCTGAGCCTGCAGTGCACAACTACTCAAGCCCAAGCTCCTAGAACCCGTGCTCTGCAAGCAAGAGTAGCCCTGGCTCCCTACAACTAGAGAAAGCCTACACACGGCAAGGAAGACCCAGTGTGGCCAAAAATAATAAATTAAAAAAATTTTTTTTAGAGGAAGGAAAATCACACAGAAAGGAACAGAAGCATTGGTGACCTCCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTAAGTTGCTTCAGTCCTGTCTGACTCTGTGCGACCCCACAGAAGAGAAAAACCCTTAGGCATTTCAGGCTGAATTTGTTTCTTTCTTACTTGAGTTATTTTGTTTTCTTTTCAATGAAATATTGATTACATTTAAATCTGTTCGTGTAAAGCCATTCTAAGTTTTGGGTAGTATAAGATGAAAGAAGGAAACAAAACAATTTGCCACTCTAGAAGCAAATTTTGTTGCTGTTGATACTTAGTTGCTAGGTTTCTGCCTCTTTGCACCCCATGGACTGTAGCCCACCAGGCTGCTCTGTCCCTGGGATTTCCCAGGCAAGAATACTGGAGTGGGTTGCCATTTCCTTCTCTAGGGGATCTTCCTGACCCAGGGATCGAACCCATGTCTCCTGCTCGGCAGGCATCTCCTGCTTGGCAAGTGGATTCTTTACCACTGAGCCAATAAGCTCTACTAAAATTGAGGATTTAAGATTTTTCCAAATTACAAATGAAGATATGATCTTGATATTAAATTATATAATCAGGATGTGCAAGTTGAATGTGAACATAATTCAACAATGGGAAATAACAGTTTGGAATTTTATTGGCATGTTTTTGCTTTTGTCTGGTTTAGTGAGTCTGTTTCAAAATTAAAATGTTTTAATGAACACCACCCTTATGGCAGAAAGTGAAGAAGAACTAAAGAGCCTCTTGATGAAAGTGAAAGAGGAGAGTGAAAAAGTTGGCTTAAAGCTCAACATTCAGAAAACTAAGATTATGGCATCTGGTCCCATCACTTCATGGCAAATAGATGGAGAAACAGTGGCTGACTTTATTTTTCTGGGCTCCAAAATCACTGCAGATGGTGACTGCAGCCATGAAATTAAAAGACGCTTACTCCTTGGAAGGAAAGTTATCACCAACCTAGACAGCATATTAAAAAGCAGAGACATTACTTTGCCAACAAAGGTTCGTCTCATCAAGGCAGTGGTTCTTCCAGTAGTCATGTATGGATATGAGAGTTGGATTATAAAGAAAGCTGAGTGCAGAAGAATTGATGCTTTTGAACCGTGGTGTTGGAGAAGACTCTTGAGAGTCCCTTGGACTGCAAGGAGATCCAACCAGTCAATCCTAAAGGAGATCAGTCCCGGGTGTTCATTCGAAGGACTGATGCTGAAGCTGAAACTCCAATACTTTGGCCACCTGATGCGAAGTACTGACTCATTGGAAAAGACCCTGATGCTGGGAAAGATTGAAGGCGAGAGGAGAAGGGGACAACAGAGGATGAGATGGTTAGATGGCATCACCAACTCAATGGAGATGAGTTTGAGTAAACTCAAAGTTGGTGATGGACAGGGAGGCCTGGCGTGCTGTGGTCCATGGGGTTGCGAAGAGTCGGACACAACTGAGCAACTGAACTGAACTGAATGAACATCCTTTGTTAGATATGTAGACAAACATAGTCTTTATAGTACAGGTGCAGCTGTTTACAAATATGGAAATAATGAAAGGAGATTCAGGGAAGACTTGAGAAGAGAAAGAGCTTGGAGGGTAAATCTGACCTATAGACTAGAAGAAGGTACTTATTATTCCTGTTTTCTTACTTATTCTTGTAGTACTAGAGTCATGCCCGTTATTTTCTTACTGATTTCTGTAGTACAGTATATGAAATTTAAAACTTTAGTGAACATCCTTTGTTAGATATGACAGTAATATCCCCTAGTCATCAAGTAAACTCTGTTTTGTATGTACTAAATAAAAATATTTTTCTCTTTTTATTTGCAAACTTCCATATGATTTTTAG
Seq C2 exon
TTAAAAAAAAAATGGAACCTTGTTCCTGTGACACTTTCGTGGCATTACCTCCAGCAACAATTGATAACAGGATTATTTTTGGGAAAAATTCAGATAGACCCTGTGATGAAGTACAAGAAGTCGTTTATTTTCCTGCTGCAGTTCATGACAACCTGAAGGAACATCTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000012966:ENSBTAT00000017239:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF0357710=Peptidase_C69=PU(18.0=90.6)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]