HsaINT0146152 @ hg19
Intron Retention
Gene
ENSG00000144306 | SCRN3
Description
secernin 3 [Source:HGNC Symbol;Acc:30382]
Coordinates
chr2:175260457-175263170:+
Coord C1 exon
chr2:175260457-175260545
Coord A exon
chr2:175260546-175263002
Coord C2 exon
chr2:175263003-175263170
Length
2457 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGG
5' ss Score
10.07
3' ss Seq
AACATCTGTATAATTTTTAGTTA
3' ss Score
5.41
Exon sequences
Seq C1 exon
GATCAAAGGTGACAGCTTCCGGCAACTGATGCCTCCACTGGCCACTCCTCCCTCCGTCCACCTGTCACTTCGGGTAGCTGGGAGGCCAG
Seq A exon
GTGAGGGGCGCGCACGGGGGAGGGGCGTGCATAGTTGAGACAGAAACCCGGAAGACCCAACTGTGGCGCGGCACTGCTTGACCGAGGGGCTCCGGAGCCCAGCTGCACCGGCTGCGGTTTGAGCGCCCAGGGCCGGGGTGCGGGGTGGACCGCGGCGGCCCTTCGACCAAAGGTGCTTGAAGCTCGAGCCCATTACTTTCTGTGGACTCTGACTCGAGCTGCAAAAGCTTTTCTGCACTGTTTTTCTCATCTATGTTATGAAGATAATAATTCCGGCCCTAACCGTAGTATGCTTGCGAGAATCCAACAATATGATGTTTCTGAAAGCGCCGGCTGAACTAAGAGCGCGTGAAATAGAATGACAGACAGCTCTGCAAGAACGGAGGCCCTGTCTATTTTGTACCCAGCTGTACGGTACTGGCGCCGAAAGACGTTCAATAAATACTTATTGAATGACGAATACGCGTTAGGAGTTGGTAAAATCTCTCAAGGCTTCACCTCCTCAGTGGGCTAGGTGCAATTCTAACCAGGGGGCAAGTTTCCTTAGCTTTCCCTACGACCCCAGTTAGGCAGCTCAGGTTACTATTGCAGCTTGATGGCCCTTGGGACTCCAGGTTTTTGAGTGGACGTGGCTGCTACTGCAGCAGGTGATCCACCAACCAAGTTCTCTATCAGGGTAATGTTAAGAATAAACCTTGGCCGGGCGCGGTAGCTCACGCCTGTAATCCCAGCACTTTGGGAGGCCAAGGTGGGTGGATCACCTGAGGTCAGGAGTTCAAGACCAGCCTGGCCAACATGGTGAAACCCCGTCTCTACTAAAAACACGAAAAATTAGCCGGGTGTGGTGGCACGCGCCTGTAATCCCAGCTACTCGGGAGGTTGAGGCAGGAGAATCACTTGAACGCGGGAGGCGGAGGTTGCAGTGAGCCAAGACTGCTCCATTGCACTCCAGCCCGGGCAACAAGAGTTAAACTCCATCAAAAAAAAAAAACAAAAAACGAATAAGCCTTTATGAGAAATTTTCTCTCCTACCAAATAATAACAATAACAGCTTTCATGTGAGTATCTACTATGTTCTATGCACTGTGCAAAACACTTTACGTGTTGCCTTATTAAGTTCTCATAACAGCCCATCAAATAGTGTCTTATTTTTCTGATGAGGCAGAAGGCATAGGTAAGAGAGAGATTAAATAGTCTGCCAAAGTTATATAGTGATAGAACTAACTATAAAACACAAATAGAAGGAGATCCAGGACATAAGAGTTGAAATACAGAAAGAAAATAACAGAAGCCATCAAGACATCAGACTTCTCGTCACTGAGGAGAAGAGGAAAACCCTTAAGAGTTTCAGTCTGAAGTTTTTATTTAGTCATTTTCTTTTCTTTTTAAGGAAACATTTATTATATTTAAATTTTGTTTTTAAGTTGCTAGCATCTGCCTGTGTAAAGCCATTTTAAGGTTTTGCCATTATTAAAGGAAAGAAGGAAACTCTGTAAAACAATGTGTCTGTTCTGGCAGCAAAATAAGGACCTTTAGGTGTTCTATTATAAGTGAAGATCTAAGATTTTCCAAGTTACAACTGAAGAGGTAATCTAGATATTAAAGTATATAATTGCGATTTATAAATTAAATATGTGAACTTTCTCCTAGAAATATCAGCAATTTGGAATTATATTGACATATTTTTGTCTGAATCAATGAGTCTGTTTCAAAATTTCAGTCTCATCAGAATTATAATGTGTATTATTTCCCAGCTCAAATAAGACCCCTTCTTCCTTCCTTTGAGGAAGTACTGGGCACGTAAGATTTTTTTCCATAAGACAAGTTCCAGCAAAGAGAATATAAAGATTAGTAAGACATACTCCCAGCCCTCAAGGATCTCATTGTCCAGTAAAGGGATTTATATATACACGAATGTAATGGAATCTAGCCTTTACAACAATAGAGCTAGGTACACGGATTCCCAAATATGGAAATGGTGAAACGAAATTCAGGGAAGACTTTAGGAGAGAAAGGTCTTAGAGAATAAATGTGAACTATACAGTAGAAGAAGGTAGTTCTCATTGCCATTTTCTTACTGAGTTGTAGTACCAGATTGAGTCCCAAGTCATATTCTTACTGATTTTTAGGCTGTAGTATACAAAATTTAAAACTTTAATGAACAGCCAAGCACGGTCACTCATGCCTGTAATCCCAGGGCTTTGGGAGGCAGAAGGGGGAGGATCTCCTGAGCCCAGGAGTTCCAGGCTGCAGTAAGCCCTGATCATACAACTGCACTCCAGCCTGGGTGAAAGAGCTAGACCTTGTCTCCAAAAAATAAAAATAAAAAAATCAAAGCTTTAATGAACATCCTTAATTAGATATGGCAATAATATCCTTTGGTCATTGAGTAAAACTCTTTATTTTTATATACTTAAAAGTGTTCTTTTTATTTTAAAACATCTGTATAATTTTTAG
Seq C2 exon
TTAAAAAAAATGGAACCTTTTTCCTGTGACACTTTCGTGGCATTACCTCCAGCAACAGTCGATAACAGGATTATTTTTGGAAAAAATTCAGATAGACTCTATGATGAAGTACAAGAGGTGGTTTATTTTCCTGCTGTAGTTCATGATAACCTGGGAGAACGTCTTAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000144306-SCRN3:NM_024583:1
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=0.524 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0357710=Peptidase_C69=PU(17.8=90.6)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)