HsaALTD0005758-1/2 @ hg19
Alternative 5'ss
Gene
ENSG00000001617 | SEMA3F
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3F [Source:HGNC Symbol;Acc:10728]
Coordinates
chr3:50192844-50197167:+
Coord C1 exon
chr3:50192844-50192997
Coord A exon
NA
Coord C2 exon
chr3:50197008-50197167
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGT
5' ss Score
10.03
3' ss Seq
ATCTTGGTTCCCCTTCCCAGGTT
3' ss Score
9.02
Exon sequences
Seq C1 exon
GCGGCCGCGGCGCCGATCCCGGCTGAGGCGCAGCGGCGAGAGGTCGCGGGCAGGGCCATGGCCCCGGGGGGCCGCTAGCGCGGACCGGCCCAACGGGAGCCGCTCCGTGCCGCCGCCGCCGCCCGGGCGCCCAGGCCCCGCCGCTGCGGAAGAG
Seq A exon
NA
Seq C2 exon
GTTTCTAGAGAGTGGAGCCTGCTTCCTGGGCCCTAGGCCCCTCCCACAATGCTTGTCGCCGGTCTTCTTCTCTGGGCTTCCCTACTGACCGGGGCCTGGCCATCCTTCCCCACCCAGGACCACCTCCCGGCCACGCCCCGGGTCCGGCTCTCATTCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000001617-1-2,2-2-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
PF135771=SnoaL_4=PU(44.7=89.5)
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)