HsaALTD0005762-1/2 @ hg19
Alternative 5'ss
Gene
ENSG00000095539 | SEMA4G
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G [Source:HGNC Symbol;Acc:10735]
Coordinates
chr10:102740617-102740986:+
Coord C1 exon
chr10:102740617-102740739
Coord A exon
NA
Coord C2 exon
chr10:102740925-102740986
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTCCCA
5' ss Score
-1.05
3' ss Seq
AACCTGATCTTCTGTCCCAGGAC
3' ss Score
8.33
Exon sequences
Seq C1 exon
GCTACCACTCTCCAGCTGCTCCCGCTACCGATCCTGCTATGACTGCATCTTGGCCCGAGACCCCTACTGTGGCTGGGACCCTGGCACCCATGCCTGCGCAGCAGCCACCACCATAGCCAACAG
Seq A exon
NA
Seq C2 exon
GACAGCACTGATACAGGACATAGAGAGAGGAAATCGAGGCTGTGAGAGCAGCAGGGATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000095539-19-20,20-20-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.364
Domain overlap (PFAM):
C1:
PF0143720=PSI=PU(64.3=66.7)
A:
NA
C2:
PF0143720=PSI=PD(26.3=68.2),PF138951=Ig_2=PU(0.1=0.0)
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGACCCCTACTGTGGCTGG
R:
GCTCTCACAGCCTCGATTTCC
Band lengths:
116-131
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)