HsaALTD0005762-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000095539 | SEMA4G
Description
semaphorin 4G [Source:HGNC Symbol;Acc:HGNC:10735]
Coordinates
chr10:100980860-100981229:+
Coord C1 exon
chr10:100980860-100980982
Coord A exon
NA
Coord C2 exon
chr10:100981168-100981229
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTCCCA
5' ss Score
-1.05
3' ss Seq
AACCTGATCTTCTGTCCCAGGAC
3' ss Score
8.33
Exon sequences
Seq C1 exon
GCTACCACTCTCCAGCTGCTCCCGCTACCGATCCTGCTATGACTGCATCTTGGCCCGAGACCCCTACTGTGGCTGGGACCCTGGCACCCATGCCTGCGCAGCAGCCACCACCATAGCCAACAG
Seq A exon
NA
Seq C2 exon
GACAGCACTGATACAGGACATAGAGAGAGGAAATCGAGGCTGTGAGAGCAGCAGGGATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000095539-23-25,24-25-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.364
Domain overlap (PFAM):
C1:
PF0143720=PSI=PU(64.3=66.7)
A:
NA
C2:
PF0143720=PSI=PD(26.3=68.2),PF138951=Ig_2=PU(0.1=0.0)
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGACCCCTACTGTGGCTGG
R:
GCTCTCACAGCCTCGATTTCC
Band lengths:
116-131
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development