HsaALTD0005762-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000095539 | SEMA4G
Description
semaphorin 4G [Source:HGNC Symbol;Acc:HGNC:10735]
Coordinates
chr10:100980860-100981229:+
Coord C1 exon
chr10:100980860-100980982
Coord A exon
chr10:100980983-100980997
Coord C2 exon
chr10:100981168-100981229
Length
15 bp
Sequences
Splice sites
5' ss Seq
CAGGTGGGA
5' ss Score
6.71
3' ss Seq
AACCTGATCTTCTGTCCCAGGAC
3' ss Score
8.33
Exon sequences
Seq C1 exon
GCTACCACTCTCCAGCTGCTCCCGCTACCGATCCTGCTATGACTGCATCTTGGCCCGAGACCCCTACTGTGGCTGGGACCCTGGCACCCATGCCTGCGCAGCAGCCACCACCATAGCCAACAG
Seq A exon
GTCCCAGGGAAGCAG
Seq C2 exon
GACAGCACTGATACAGGACATAGAGAGAGGAAATCGAGGCTGTGAGAGCAGCAGGGATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000095539-23-25,24-25-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.364
Domain overlap (PFAM):
C1:
PF0143720=PSI=PU(64.3=66.7)
A:
NA
C2:
PF0143720=PSI=PD(26.3=68.2),PF138951=Ig_2=PU(0.1=0.0)
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGACCCCTACTGTGGCTGG
R:
GCTCTCACAGCCTCGATTTCC
Band lengths:
116-131
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Autistic and control brains
- Pre-implantation embryo development