HsaALTA1003588-2/2 @ hg38
Alternative 3'ss
Gene
ENSG00000055950 | MRPL43
Description
mitochondrial ribosomal protein L43 [Source:HGNC Symbol;Acc:HGNC:14517]
Coordinates
chr10:100979198-100983817:-
Coord C1 exon
chr10:100983755-100983817
Coord A exon
chr10:100979373-100979646
Coord C2 exon
chr10:100979198-100979372
Length
274 bp
Sequences
Splice sites
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
3' ss Seq
TAAAATTCTCACTTTGCCAGCAC
3' ss Score
4.63
Exon sequences
Seq C1 exon
GACACTGGCCTGAGACTGTCTGCAGTTGCACCGCAGATCCTCCTGCCCGGCTGGCCCGACCCA
Seq A exon
CACTTTGAGAGGCCGAGGCGAGCAGATCACGAGGTCAAGAGATCGAGACCATCCTGGGCAACACAGTGAAACCCCATCTCTATTAAAAATACAAAAATTAGCCAGGCGTGGTGGCACACGCCTATAGTCCCAGCTACTCGGGAGGCCGAGGCAGGATAATCACTTGAACCCGGGAGGCGGAGATTGCAGTGAGCCGAGATCGCGCCACTGCACTCCAGCCTGGCAACAGAGCAAGACTCCCTCTTAAAAAAAAAAAAAAATTCTCACTTTGCAG
Seq C2 exon
CCAGACCTCCCCACAGTGGATCCTATCTCATCCTCATTGACCTCTGCTCCAGCCCCTATGCTGTCCGCAGTTTCTTGCCTCCCGATTGTCCCTGCACTGACCACTGTGTGCTCAGCGTGAAGGCTGCATAGAAGTGTGTACGGCTTGAGGTTTCAGCATCCAGGCTGCAGACCCC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000055950-14-14,14-13-2/2
Average complexity
Alt3
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.203 A=NA C2=0.122
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACACTGGCCTGAGACTGTCT
R:
GGTCTGCAGCCTGGATGC
Band lengths:
236-510
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains