HsaINT0147399 @ hg38
Intron Retention
Gene
ENSG00000095539 | SEMA4G
Description
semaphorin 4G [Source:HGNC Symbol;Acc:HGNC:10735]
Coordinates
chr10:100981168-100985615:+
Coord C1 exon
chr10:100981168-100981229
Coord A exon
chr10:100981230-100983304
Coord C2 exon
chr10:100983305-100985615
Length
2075 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
CTCTCCCCCAAACCCCACAGGGC
3' ss Score
8.83
Exon sequences
Seq C1 exon
GACAGCACTGATACAGGACATAGAGAGAGGAAATCGAGGCTGTGAGAGCAGCAGGGATACAG
Seq A exon
GTAAGTGACTCATATGAGTGTGGGTCTAGCTACGCAGACTGTCCTCTTTGCCATTTACTGCCATGTGTACGTATATGTTTGTATCTGAGTGGCTGTGGCTATGTACATTTGGTAAGGATGACTCAAACACAGAGCCTGGCACAGAGTAAGTGCTCAACAAACATTTACTGCCCAAATGAATTATAAACTAGGAAACATATTTAAGATGTGAAGTGTCTTGTCACTTCTGGAGCTTATAGCCAAGTAGTGGATGACAAGGGTTCAGGACGGTAATGGGTATTTCCCCAAGGAAGATCGGATGACTGAACTGATATCTGAAGAAAGAACAAAAGTTAATCATCACAGCTAAGATGTATTAAGTATTTACTGTGTGCCAGACACTGATCTAAATACTTCTATGCATGATGTCATCTACTGTCACAGCATTCTTATGAGAAAGGTGCCATTATTATTATCCCCATGAGGGACCTCTCTGAAGCCCAGGGAGTGTAAGTAAATTGCTCAAACTTATTCAGCTATTAAGAAACTGGACCAGAATTCAAACCTGGCTGAGTACAGTGGCTCACGCCTGTAATCCCAGCACTTCGGGAGGCTGAGGTAGGTGGATTGCTTGAGCTCAGGAATTGGAGACCAGCCTGGGCAACATGGCAAAACCCCATCTCTACAAAAAATACAAAAATTAGCCGGGTGTGGTGGCACATGTCTGTAATCCCAGCTACTTGGAAAGCTGAGGTGGGAGGATCACTTGAGCCTGGGAGGCAGAGGTTGCAGTGAGCCAAGATCACACCATTGCACTCCAGCCTGGATAACAGAGTGAGACCTCATCTCATCTCAAAAAAAAAAAAAAAGAAAGAAAAAAGAATTCAAACCTGACCCCAAGCAGTCTGATTTGACTTTGTGCTTCTGGTCACTATACTATGCTATCTCCCACAAGTTAGCCAGGCAAGCAGAGGACATGGGGTAATGGGGTGACATGCAAGCAGAGGGAGCAGCAGGCAGAGGGAGGCTGGCACATTTGAGTGACAGGAGAATAGGCTGGACAAGTGGGCAAAGGCCATGTTGAAGATTTTGGTCTTTATCCGAAAAGCAATAGGAAACCTCTGAAGAGTTTTAGGCTGGAGAGTGGCATGATCAGATTTGTGTTTTTAAAATACCTCTCATGAAGAATGGATTACATGGGGCCAGAGTGGGCCAGGAGTCATGGAAGGAGAGAAATCAACAGGTCTAAGATAGATGCCAGAAACAGAATCTTAGTGACAGTTAGATACAAACGTGAAGAAGGGCCGGGCACGGTGGCTCATGCCTATAATCCAGCACTTTGGGAGGCCAAGGCGAGTGGATCACTTGAGGTCAGGAGTTCGAGACAAGCCTGGCCAACATGGTGAAACCCTGTCTCTACTAAAAATACAAAAACTAGCTGGGCATGGTGGCATATGCCTGTAATCCCAGCTACTCAGGAGCCAGAGGCAAGATAATCGCGTGAACCAGGGAGGTGGAGGTTGCAGTGAGCTGAGATCACGTCACTGCACTCCAGCCTAGGCGACAGAATGAGACTCCGTCTCAAAAAAACAAAACAAAACAAAAAGGCGAGCAAGAAAGAGAAGGGAGACTCCCAGGTTTCTGACTTAAGCAACTGTGTGGCTGGTGGTGCCATTCACAGTGGTGGCGATTCAAGGAAAGGACTTGGTGTCGTTGGGGAGAAAAGCTTTGGTTTTGAGGTGTCCAAGAGACCTCATGTGGAGATGCCCAGCACATGGTAGATATCCGAGTCTGGCACTCAGGAGAGAAGTCTGAGGTAGAGATTAGGAGTTACTGGCAGATGGCAGAAATTGAAACCACAGGAGAGGATGAGAGCATGGAGAGAGAATGGAAAAGGGCCCAAGGCACTGCCTGCTTCCTGGGAAGGGCCAACGTGAACCTTCTGTGGAAGCATGAGCACAGAGCCTGGGTCAGCTGTCACTGTGATTCTGGGTTCTGTGCTTGGTGCCAGGGACTTGGCAGTGAACAGTCTGGCTTGCCATCTCTAATCCCTTCCTGGGACGGGCTGGTACTGACCTCTCCCCCAAACCCCACAG
Seq C2 exon
GGCCACCACCACCACTGAAGACCCGCTCTGTGCTCCGGGGTGATGATGTCCTCCTGCCCTGTGACCAGCCATCCAACCTGGCCCGGGCCTTGTGGCTACTCAATGGGAGCATGGGCCTGAGCGATGGGCAGGGTGGCTACCGTGTGGGCGTGGACGGGCTGCTGGTTACAGATGCACAGCCTGAGCACAGTGGCAACTATGGCTGCTATGCCGAGGAAAATGGCCTCCGCACCCTGCTGGCCTCCTATAGTCTCACAGTCCGGCCAGCCACTCCTGCCCCAGCTCCAAAAGCCCCTGCCACACCTGGGGCACAGCTGGCACCTGATGTGAGACTGCTCTATGTGCTAGCCATTGCCGCGCTTGGTGGCCTCTGCCTCATCCTGGCCTCCTCCCTCCTCTATGTGGCCTGTCTGCGGGAAGGCAGACGAGGGCGCCGACGGAAATACTCACTGGGTCGGGCCAGCCGGGCAGGAGGATCTGCGGTGCAACTGCAGACAGTCTCAGGCCAGTGTCCTGGAGAGGAAGATGAGGGTGATGATGAGGGGGCTGGGGGCCTGGAGGGCAGCTGTCTCCAGATCATCCCTGGGGAGGGAGCCCCAGCCCCACCACCCCCACCGCCCCCACCGCCACCGGCTGAGCTGACCAATGGCTTGGTGGCACTGCCCAGCCGGCTGCGGAGGATGAATGGCAATAGCTATGTGCTTCTGAGGCAGAGCAACAATGGAGTACCAGCAGGGCCCTGCTCCTTCGCCGAGGAACTCAGCCGCATCCTGGAAAAAAGGAAGCACACGCAGCTCGTGGAGCAGCTAGATGAGAGCTCTGTCTGAGCCCAGCCTCCCAGAACAAATGCTCTTCCAAGCCAGCCTATCTGTCCCAGGCTGGGCCACTGCCTCCCTAACACAGCCACCCTCCCTTCATTACCCCCACTCCATACCCTTCTCCCAACTTTTTGATGTCCCTGTAGGGCTGGCCAGTCAGGCCCAGCCAAAGCCCCCTCCTCAGTCTCCACAGACCCACATGTGAGCAGCCCAGGCCCATCGGTGCTCCTCAGAGGTAGGTGCTCCCTCAGGATCAGGTGCCCTGCAGACCCAGAGCCAGTTCCTATCCCCTAACCTAAACACTTATAGGTGAGGACTCCATCCTCCTGTTCCATTCATCTGCCCAAACCCTTTCTCTTTCTCCCAGGCAGGGCTCTGCAGGTCCATATGGGCTCAATGTCACCACCCTCTGCATGGCCCTGTGTGCTGGATGGTCCTGAAACCAGACAAGACCTCTGCCAGCCACCTAAGCCCTGCGTACATTCACATGCACACATGGAAGAATGTTTATCGGCTGGGCTGCAGTGCCCCCACCCTCACCTTCTCCTGGTGCATTCTTGTTTCATCCCTGCTTCTGGACTTGGGGTACCCTCCCAATTGCCACATCCTATCTGGTCCTCTTCCCCAGCCCCATGTGGTGACCTCTTTGTCAAGAGCTTGGGAACGGGCCAGCCTGGGGAGGTAAGACTGCATCACTCCCCTCCTCTCCCTTCCTGTGTGGCCCTTGTGAATCAGCCTCCCCACTCTCCTTGGTCATTCTCAAGAGTATGAGAGACAGAGCTCCAGGCATGTCCCATCCCCATGCACATGTGGTAACACACACCTGTATCACACATGTGCTTACATTTCCACTCACATGCACCTCTGAGCCTCCCTTGCTGTCTTGGACCTGTCTGTTGGGTTTAGTCCGTGGACATTTCAGAGGGAGATCCCCCTCCCATTTAACTGTCCTCACAGGCCCTTGCCTAGGATGGATGACCAACACTGCACTCAATGAGCCAGCCTCTCTTTTGGGGGAATCAAGCATTTGCTTCCTCTAGACTACAGCAGGGAAAGGGAGGAGAAATCTGATGTCTCAACTGGCACATGAAGCCCATTCTTGGAACTATGCAAAGGGCAGAGGCTGGGAGTTTGGACGCTTAGCTCCTACCCCTGTCCTACCTCACCGGGGCACTTTCAGGGGCCAGGGGCCTCTGAAGTCTCTAGGCCTATATGGGACAATCAATTCTGACTGAGCTCCCCCATTCCCCTCGGGTGAGGATGACTGTTATTTTTGTAGCTGAGAACGTGGAATCCCACGGGTTTTTACTGCCCTTCACCCAACCTCTCCCACCTCCACCCCACAATGAATGTATTTATTGTGAGAATGGCTACACTTCTTTAGGAATGCCCCCACTTACAACCAGGTGGGTGGAACAGGCATGTGACAGAGTGGGGAGCCTGGGCTCAGCTCCTCCCCCTGCCGTTGGTTAATAAACACCCTTTTTCCCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000095539:ENST00000210633:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.364 A=NA C2=0.444
Domain overlap (PFAM):
C1:
PF0143720=PSI=PD(26.3=68.2),PF138951=Ig_2=PU(0.1=0.0)
A:
NA
C2:
PF138951=Ig_2=WD(100=31.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development