GgaINT1024740 @ galGal4
Intron Retention
Gene
ENSGALG00000026957 | SEMA4G
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G [Source:HGNC Symbol;Acc:HGNC:10735]
Coordinates
chr6:22627559-22628698:-
Coord C1 exon
chr6:22628637-22628698
Coord A exon
chr6:22628413-22628636
Coord C2 exon
chr6:22627559-22628412
Length
224 bp
Sequences
Splice sites
5' ss Seq
GTGGTAAGT
5' ss Score
10.36
3' ss Seq
TCCTTCTGACATCTGTTCCGCAG
3' ss Score
-3.5
Exon sequences
Seq C1 exon
CACAGGGCTGGTGCAGGATGTGCAGAGCGGCAATGTGGGATGTCGGAGCAGCTCTGGGCGTG
Seq A exon
GTAAGTCATCACAGAATCACAGAGTTCTTGGGTTGGAAGGTGACCCGAAAGCCTATCCAGTTTTGACCCCTGCCATGGGCGGTTGGAAGGTCAGGATGACCAGGATCCCATCCAACCTGGCCTTGAATACTTCCGTGGACGGGGGCACCTGCAGCCCTCGGGGCAGCCTGTGCCAGGGCCTCACCTCCCTGCAAGTAATGAATTTCCTTCTGACATCTGTTCCG
Seq C2 exon
CAGGCTCCCTGCCATGGAAGAACCGCACGGTGCTGCGCGGGGATGATGTGCTGCTGCCCTGTGACCAGCGCTCCAACTTGGCACGGGCTGTCTGGCTGCTGAATGGCAGCGAGGTGCCGGGCACGGGGCAGGAGCGGCTGCGCGTTGGGGTGGACGGGCTGCTGGTGACCAACACGCTGCCAGGACACAGCGGCGAGTACCGCTGCTATGGTGAGGAGCGGGGGTTGCGCACGCTGCTGGCTGCCTACAGCCTCACCGTGCTGCCCCAGCTGCCTCGTGCCGCCACCACCACCACCTCCGGGCCCATAGCGGCCAGCCAGGCTTCTGGAGACACCAAGGTGGTCTACGTGTCGGCTATCGTGGTGCTGGTGGTGCTGTGTGCCGTGCTGGGTACCGTCCTGCTCTACGTGTCCTGCCTGGAGAAGCGCAGGGGGAAGTACGTGCTGGGGGAGCCGCGGGCTGTGAGTCCCGAGCTGCAGACGGTGTCGGCCAGCTGCCTGCGCAAAGCCCGCGGCGAGGAGGATGAGGAGGACGAAGAGGATCCGGCTTATCCCTGCCTGCGCATCATCCCCGGTGAAGCACCCACAGCCACCGTGTCCCCAGCCAAGGAGCTGCCGGAGGCCGTGCCCCCACCTCCACCTCCACCGCTGCCCACCGAGCTCACCAACGGGGTGGGCTCCCTGCCCAGCGTCCTCCGCAAGATGAACGGCAACAGCTACATGCTGCTGCAGCAGCAGGACGAGCCGCTGGCCTCGCCGCTCTACAGCGCGTCCTTCACCGAGGAGCTCAGCAAGATCCTGGAGAAGCGGAAACACATGCAGCTGGTGGAGAAGCTGGATGAGAGCTCCGTGTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000026957:ENSGALT00000044069:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.045 A=NA C2=0.335
Domain overlap (PFAM):
C1:
PF0143720=PSI=PD(34.6=81.8)
A:
NA
C2:
PF138951=Ig_2=WD(100=29.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAATGTGGGATGTCGGAGCAG
R:
CAGCACGGTGAGGCTGTAG
Band lengths:
295-519
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]