RnoINT0132989 @ rn6
Intron Retention
Gene
ENSRNOG00000014650 | Sema4g
Description
semaphorin 4G [Source:RGD Symbol;Acc:1310436]
Coordinates
chr1:264748715-264753397:+
Coord C1 exon
chr1:264748715-264748776
Coord A exon
chr1:264748777-264751120
Coord C2 exon
chr1:264751121-264753397
Length
2344 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
3' ss Seq
TCCCTCCCCATCCTCCCCAGGAC
3' ss Score
10.57
Exon sequences
Seq C1 exon
GACAGCATTGATACAGGACATAGAGAGAGGAAATCGAGGCTGTGAGGGCAGCAGGGATGCAG
Seq A exon
GTAGGTGGAACTCAGGGACTTGTGCGGATGTTTTAGAGTTGCTGTGCTTGGGTCGTTTTGGTGAGGATGACCCAGCACAGGGTGCTTGACGGATATTTATTTCTCAAGTACAGTGTAAGCAAGGAAATGGGCGCAAGACTAGGAGACAGGTGGGGGCGTGGCTCATTGGTAGAGAACTCTCCTTGTCTTTCATGTGTAAAGGCTCTGGGATTGCTCTCTAGAACCACACACCACACCACACACAGACACACACACACACCACACACACACACACACACACACACACACACACACACACACGGGGGGGAGGAGTTAATGAGTTCATTATGGTCATGTGATCATATCTAAAGTGTATGCCTACATGGGGGAGGTGTAAGCACAAACAACTGTGATTATTAATCATTTCGACTACAAGATGCAGACGGTTAATGTGTTTCTCTCCAAACAAAATCATGTGGCAGAGCCGATATCTAAAGGAAGAACAAAGTCAGCGTCATGGACTGAGAACTTAGGTGCCAAGCACTGGTCTAAATACTGCCGTGTGTTTATTTTCACAACACTCGGTGTGAGCGGCACCATTATCATCCCCATGAGAGACCGCCCCTCTGAGGCATGGGGAACGTAAGGAGCCAGCTCAGTTACTCAGCTACTGAGCAGCAGGTGCAGAATCGGCATGGCTGAAGCAGTCAGACGAAGTTTGTGCTTCTGATCACTAAGCTGTGCCAAGTCCAAGCTTGTCCGGCAGGTGGAAGGCTTGAGGCAGGCAATGGCACTCAAGCAGGGGGTTAGAGAACTCAGGTAGAAGAGGCTGTCGAGGTGAGCAGGGACCATGTTCACACTGTCTGTCCTTACAGGAAACCTCTCAAGAGTTTTACACCAAGTAGTATGATCAGATTTAGATTGTTTTTGTTTTTGTTTAATCTAGACAGGGTTTCTTTGGGTAGCCTTGGCTGTCCTGGAACTAGCACTGTAGACCAGGCTGGCCTTGAACTCAGAGATCTGCCTGCCTCTGCCTCTCAAGAGTTGGCATCAAGGGACTGGAGAGATGGCTCAGTGGTTAAGAGCATCGGCTGCTCTTCCAGAGGTCCTGAGTTCTATTCCCAGCAACCACATGGTGGCTCACAACCATCTGTAATGAGGTCCTCTGGTCTTCAGGCACACATGCAGGCAGAAAGCTGTATGATGTATACTAAATAAATAATTAGTCAAATAATTAAATAAATATTTAAAAAAAGAGTTGGCATTAAAGGCCTCCCTGCCCTTATTTTTAAAAAATATTTTGAGTGCATTTTGCCTACATGTACGTATGTGCACATCTGTGCCCGATGTCCGTGGAACCACCCCATGGATGCTGGGAGCCAAACACAGGTCCTCTGCAAGGGCAACAACTGCTCTTAACCACTGCGGGCCATCTTTCTAGCTCCTGTGTTCAAAAAATTTTTTTTAAAGATTTATTCATTTATTATATATAAGTACACTGTAGCTGTCTTCAGATACACCAGAAGAGGGCATCGGATCTCTTTACAGATGGTTGTGAGCCACCATGTGGTTGCTGGGAATTGAACTCAGGACCTCTGGAAGAGTAGTCGGGTGCTCTTAACCACTGAGCCATCTCTCCAGCCCCTCAAATTTTTAAAACTGTATTTATTTTGCTCACAAGCCTGTGTGATGCGGATGCGCACGTATAAGACACCTTATGAGAGTCCATTTTCTCCTTCCTACATGTGGATCCCAGGGCTTGAAATCAGTGGTCAAGCTTAGCAGCTAGCACCTACACTCATTGGCCTGTCTCCTCAGTCTAGATTTGTTTCCAAGGATTACCTTTAGTTGCAAGAAGAGATTAAACGAGGGCCCTAGAGGGCAGGCAGCCATGGAAGGAGAGAAAGGAACAGGCCTGAGTCTCATGAGGATAGACATAAAAATGAGGCAGAGAGGCAAGGGAGCCTCCCAGGTTCCTGATGCAAACTGCTGAGCAGGTGGTGGTAGCAAAGAAAGGACCTGTGTGGGTGATGAATGAGATTCTGGCCTTATGGAGATGCCCGCAAATGGTAACGGTCAAGTCTCAGGAAAGGAAGCTGTGCGGAAGGTAAGATTAGGAGTCCTTTGGTAAACGGTAGGAACTGAAAGCACAGGAAAGAGGAGCTGCTAGAGAAGGAAAAAAAGGCCCAAGGCACTGCTGACTCCTGATGAAGCCCATATGAGTCCTGGGAAGCATACACAGGCTTGCTTAGATGTCACTAATTCTAGACTTTGTGCTTCTAGACAGCTGTCTACAGACTATCTTGCCATTCCCAATGCTGTCTGGGATGGGCAGGTATTGATCTTCCCTCCCCATCCTCCCCAG
Seq C2 exon
GACCACCACCGCCATTCAAGACCCGATCTGTGCTCCGGGGTGATGATGTCCTCTTGCCCTGTGACCAGCCATCTAACCTGGCCCGGGCTTTGTGGCTCCTCAACGGGAGCAAGAGCCTGAGTGATGGGCAGGATGGCTACCGCGTGGGAGTGGATGGGCTGCTGGTAACAGACACACAACTGGAGCATAGTGGCAACTATGGCTGCTATGCTGAGGAGAACGGCCTCCGTATGCTGCTGGCTTCCTACAGCCTCATAGTCCGGCCAGCCACCCCTGCCCCAGCTCCACAAGCCCCTGCCACACCTGGGGCACAGCTGGCACATGACATGAGATTGTTCTATGTGGTAGCCATTGCTATACTTGGTGGCCTCTGCCTTATCTTGGCATCTTCCCTCCTCTATGTGGCTTGTCTGCGGGGAGGCAGACGAGGTCGAAGACGAAAATACTCATTGGGTCGGGCTGGCCGGGCAGGGGGCTCAGCCGTGCAGCTGCAGACTGTCTCAGGCCAGTGTCCCGGAGAGGAAGATGACGGTGATGATGGAGAAGGCGCTGGCAGTCTGGAGAGTGGCTGCCTCCAGATCATCCCTGGGGAAGGAGCCCCAGCCCCACCACCCCCACCACCTCCACCCCCACCTGCTGAGCTGACCAATGGACTGGTGGCCCTGCCCAGCCGGCTGCGAAGGATGAATGGCAACAGTTACGTGCTCCTGAGGCAGAGCAACAATGGAGTGCCAGCAGGTCCCTGCTCCTTTGCAGAGGAGCTCAGCCGCATCCTGGAGAAGAGGAAGCACACGCAGCTTGTAGAGCAGCTAGATGAGAGCTCTGTTTGAACCTAGCCTCCTAAACAAATGCTCTTCCAAGCCAGCCTGTCTGCCCTAGGCGGGGCCACTGCCTCCCCAAACATCCACTCTCCTTCTTGCTCCCAACTCCATTTCCTTCTTCCAACTTTTTGATGTCTCTGTAGGGCTGGCCAGAGTCATGGTTAGCCAAAGTCCCCTCTTCAGTCTCCAAGACACATGTGAGCAGCCCAGACCCACCGGTGCTCCTCAAAGGTAGGTGCTCCCCAGAACCAAGTACTCCGCAAACCCAGACCCAGTTTCTGTCCCTTGACCTAAAGACTTGGGAGGAGAGGATTGTCTTCTTATCCCATTATCTGTCCAACCTTCCTCTTCTTCTCAGGTAGGGCTCTGCAGGTCCAGATGGCCTCAATGTCACCACCCTCTGCACAGCTGTGTGCTGGGTAGTCCTGAATTCAGACAAGACCTCTCTCTACCAGCCACCTGAGTCCTGCTTCCATTCCCATGTGCACATGGAAGAATGTTTATCAGCTGGGCTGCAGTGTCCCGCTCCTCCTCTTGGGGCATCCTTGTCTCACTCCTCCTAGATTCAGGGCACCTTCCAATTGTCACCTTCCTATCTAGTCCTCTTCAGTCCCAGCCCCATGTGGTAACCCTTTGGCAGGAGTCAGGGAACAGGCCGGCTTGGGAGGAAAGAAGCATCACTCCTCTCTTCTTTCCTCTGTAACCCTTGTGAGTCAGCCTCCCTCCTCCTCTCATTCACATGCAAGGGTGCCAGAGCTCCAGGCATGTCCTTTTCTTGTGCATATGTGGCAACACATCCACGTCATGTGCTGACATTTCCACCCACATGTACATTCTGAACCTCCCCTTGCTGCCTCAGTCAGACCTCTGTCTACTGGGCTTGGTCCATGGATATTTCAAAGGGAGATTTCCCTTCCCATTTAGCTGTCCTCACTGAACTAGGACAAGTGGCCAACACTGCACTCAATGAGCCAGCCTCCCTCTTAGGGACCAAGCAATTGCTTCTCCTAGACCAGAGCAGGAGGAAGTGATCTGTTATCTCACCTGGCACATGAAGCCCATTCCTGGAACTATGCAAAGGGCAGAGGCTGGGAGTTTGGATGCTTGGCTCCCATTCCTGTCCTACCTCACCAGGGCACTTTCAAGGTCCAGGGCCTCAGATGTCTCCAGGCCCATATGGGACAATCAACCCTGACTGAGCTCTCCCATTCCCCTTGGGTGAGGATGACTGTTATTTTTGTAGCTGAGAACGTGGAACCCCACGAGTTTTTACTGCCCTTCACCCATACCTCTCCCACCTCCACCCCACAATGAATGTATTTATTGTGAGAATGGCTGTACTTCTTCAGGAATGCCCCCCACTCATCACCCAGGTGGGTGGAGCAGGCATGTGATGGAATGGGGAGCCTGGGCTCTGCTCCTCCTGATGTTGGCTAATAAATGCCCTCTTTCCCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014650:ENSRNOT00000019956:13
Average complexity
IR
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.364 A=NA C2=0.409
Domain overlap (PFAM):
C1:
PF0143720=PSI=PD(32.7=81.8)
A:
NA
C2:
PF138951=Ig_2=WD(100=31.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]