HsaINT0147399 @ hg19
Intron Retention
Gene
ENSG00000095539 | SEMA4G
Description
sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4G [Source:HGNC Symbol;Acc:10735]
Coordinates
chr10:102740925-102745372:+
Coord C1 exon
chr10:102740925-102740986
Coord A exon
chr10:102740987-102743061
Coord C2 exon
chr10:102743062-102745372
Length
2075 bp
Sequences
Splice sites
5' ss Seq
CAGGTAAGT
5' ss Score
10.86
3' ss Seq
CTCTCCCCCAAACCCCACAGGGC
3' ss Score
8.83
Exon sequences
Seq C1 exon
GACAGCACTGATACAGGACATAGAGAGAGGAAATCGAGGCTGTGAGAGCAGCAGGGATACAG
Seq A exon
GTAAGTGACTCATATGAGTGTGGGTCTAGCTACGCAGACTGTCCTCTTTGCCATTTACTGCCATGTGTACGTATATGTTTGTATCTGAGTGGCTGTGGCTATGTACATTTGGTAAGGATGACTCAAACACAGAGCCTGGCACAGAGTAAGTGCTCAACAAACATTTACTGCCCAAATGAATTATAAACTAGGAAACATATTTAAGATGTGAAGTGTCTTGTCACTTCTGGAGCTTATAGCCAAGTAGTGGATGACAAGGGTTCAGGACGGTAATGGGTATTTCCCCAAGGAAGATCGGATGACTGAACTGATATCTGAAGAAAGAACAAAAGTTAATCATCACAGCTAAGATGTATTAAGTATTTACTGTGTGCCAGACACTGATCTAAATACTTCTATGCATGATGTCATCTACTGTCACAGCATTCTTATGAGAAAGGTGCCATTATTATTATCCCCATGAGGGACCTCTCTGAAGCCCAGGGAGTGTAAGTAAATTGCTCAAACTTATTCAGCTATTAAGAAACTGGACCAGAATTCAAACCTGGCTGAGTACAGTGGCTCACGCCTGTAATCCCAGCACTTCGGGAGGCTGAGGTAGGTGGATTGCTTGAGCTCAGGAATTGGAGACCAGCCTGGGCAACATGGCAAAACCCCATCTCTACAAAAAATACAAAAATTAGCCGGGTGTGGTGGCACATGTCTGTAATCCCAGCTACTTGGAAAGCTGAGGTGGGAGGATCACTTGAGCCTGGGAGGCAGAGGTTGCAGTGAGCCAAGATCACACCATTGCACTCCAGCCTGGATAACAGAGTGAGACCTCATCTCATCTCAAAAAAAAAAAAAAAGAAAGAAAAAAGAATTCAAACCTGACCCCAAGCAGTCTGATTTGACTTTGTGCTTCTGGTCACTATACTATGCTATCTCCCACAAGTTAGCCAGGCAAGCAGAGGACATGGGGTAATGGGGTGACATGCAAGCAGAGGGAGCAGCAGGCAGAGGGAGGCTGGCACATTTGAGTGACAGGAGAATAGGCTGGACAAGTGGGCAAAGGCCATGTTGAAGATTTTGGTCTTTATCCGAAAAGCAATAGGAAACCTCTGAAGAGTTTTAGGCTGGAGAGTGGCATGATCAGATTTGTGTTTTTAAAATACCTCTCATGAAGAATGGATTACATGGGGCCAGAGTGGGCCAGGAGTCATGGAAGGAGAGAAATCAACAGGTCTAAGATAGATGCCAGAAACAGAATCTTAGTGACAGTTAGATACAAACGTGAAGAAGGGCCGGGCACGGTGGCTCATGCCTATAATCCAGCACTTTGGGAGGCCAAGGCGAGTGGATCACTTGAGGTCAGGAGTTCGAGACAAGCCTGGCCAACATGGTGAAACCCTGTCTCTACTAAAAATACAAAAACTAGCTGGGCATGGTGGCATATGCCTGTAATCCCAGCTACTCAGGAGCCAGAGGCAAGATAATCGCGTGAACCAGGGAGGTGGAGGTTGCAGTGAGCTGAGATCACGTCACTGCACTCCAGCCTAGGCGACAGAATGAGACTCCGTCTCAAAAAAACAAAACAAAACAAAAAGGCGAGCAAGAAAGAGAAGGGAGACTCCCAGGTTTCTGACTTAAGCAACTGTGTGGCTGGTGGTGCCATTCACAGTGGTGGCGATTCAAGGAAAGGACTTGGTGTCGTTGGGGAGAAAAGCTTTGGTTTTGAGGTGTCCAAGAGACCTCATGTGGAGATGCCCAGCACATGGTAGATATCCGAGTCTGGCACTCAGGAGAGAAGTCTGAGGTAGAGATTAGGAGTTACTGGCAGATGGCAGAAATTGAAACCACAGGAGAGGATGAGAGCATGGAGAGAGAATGGAAAAGGGCCCAAGGCACTGCCTGCTTCCTGGGAAGGGCCAACGTGAACCTTCTGTGGAAGCATGAGCACAGAGCCTGGGTCAGCTGTCACTGTGATTCTGGGTTCTGTGCTTGGTGCCAGGGACTTGGCAGTGAACAGTCTGGCTTGCCATCTCTAATCCCTTCCTGGGACGGGCTGGTACTGACCTCTCCCCCAAACCCCACAG
Seq C2 exon
GGCCACCACCACCACTGAAGACCCGCTCTGTGCTCCGGGGTGATGATGTCCTCCTGCCCTGTGACCAGCCATCCAACCTGGCCCGGGCCTTGTGGCTACTCAATGGGAGCATGGGCCTGAGCGATGGGCAGGGTGGCTACCGTGTGGGCGTGGACGGGCTGCTGGTTACAGATGCACAGCCTGAGCACAGTGGCAACTATGGCTGCTATGCCGAGGAAAATGGCCTCCGCACCCTGCTGGCCTCCTATAGTCTCACAGTCCGGCCAGCCACTCCTGCCCCAGCTCCAAAAGCCCCTGCCACACCTGGGGCACAGCTGGCACCTGATGTGAGACTGCTCTATGTGCTAGCCATTGCCGCGCTTGGTGGCCTCTGCCTCATCCTGGCCTCCTCCCTCCTCTATGTGGCCTGTCTGCGGGAAGGCAGACGAGGGCGCCGACGGAAATACTCACTGGGTCGGGCCAGCCGGGCAGGAGGATCTGCGGTGCAACTGCAGACAGTCTCAGGCCAGTGTCCTGGAGAGGAAGATGAGGGTGATGATGAGGGGGCTGGGGGCCTGGAGGGCAGCTGTCTCCAGATCATCCCTGGGGAGGGAGCCCCAGCCCCACCACCCCCACCGCCCCCACCGCCACCGGCTGAGCTGACCAATGGCTTGGTGGCACTGCCCAGCCGGCTGCGGAGGATGAATGGCAATAGCTATGTGCTTCTGAGGCAGAGCAACAATGGAGTACCAGCAGGGCCCTGCTCCTTCGCCGAGGAACTCAGCCGCATCCTGGAAAAAAGGAAGCACACGCAGCTCGTGGAGCAGCTAGATGAGAGCTCTGTCTGAGCCCAGCCTCCCAGAACAAATGCTCTTCCAAGCCAGCCTATCTGTCCCAGGCTGGGCCACTGCCTCCCTAACACAGCCACCCTCCCTTCATTACCCCCACTCCATACCCTTCTCCCAACTTTTTGATGTCCCTGTAGGGCTGGCCAGTCAGGCCCAGCCAAAGCCCCCTCCTCAGTCTCCACAGACCCACATGTGAGCAGCCCAGGCCCATCGGTGCTCCTCAGAGGTAGGTGCTCCCTCAGGATCAGGTGCCCTGCAGACCCAGAGCCAGTTCCTATCCCCTAACCTAAACACTTATAGGTGAGGACTCCATCCTCCTGTTCCATTCATCTGCCCAAACCCTTTCTCTTTCTCCCAGGCAGGGCTCTGCAGGTCCATATGGGCTCAATGTCACCACCCTCTGCATGGCCCTGTGTGCTGGATGGTCCTGAAACCAGACAAGACCTCTGCCAGCCACCTAAGCCCTGCGTACATTCACATGCACACATGGAAGAATGTTTATCGGCTGGGCTGCAGTGCCCCCACCCTCACCTTCTCCTGGTGCATTCTTGTTTCATCCCTGCTTCTGGACTTGGGGTACCCTCCCAATTGCCACATCCTATCTGGTCCTCTTCCCCAGCCCCATGTGGTGACCTCTTTGTCAAGAGCTTGGGAACGGGCCAGCCTGGGGAGGTAAGACTGCATCACTCCCCTCCTCTCCCTTCCTGTGTGGCCCTTGTGAATCAGCCTCCCCACTCTCCTTGGTCATTCTCAAGAGTATGAGAGACAGAGCTCCAGGCATGTCCCATCCCCATGCACATGTGGTAACACACACCTGTATCACACATGTGCTTACATTTCCACTCACATGCACCTCTGAGCCTCCCTTGCTGTCTTGGACCTGTCTGTTGGGTTTAGTCCGTGGACATTTCAGAGGGAGATCCCCCTCCCATTTAACTGTCCTCACAGGCCCTTGCCTAGGATGGATGACCAACACTGCACTCAATGAGCCAGCCTCTCTTTTGGGGGAATCAAGCATTTGCTTCCTCTAGACTACAGCAGGGAAAGGGAGGAGAAATCTGATGTCTCAACTGGCACATGAAGCCCATTCTTGGAACTATGCAAAGGGCAGAGGCTGGGAGTTTGGACGCTTAGCTCCTACCCCTGTCCTACCTCACCGGGGCACTTTCAGGGGCCAGGGGCCTCTGAAGTCTCTAGGCCTATATGGGACAATCAATTCTGACTGAGCTCCCCCATTCCCCTCGGGTGAGGATGACTGTTATTTTTGTAGCTGAGAACGTGGAATCCCACGGGTTTTTACTGCCCTTCACCCAACCTCTCCCACCTCCACCCCACAATGAATGTATTTATTGTGAGAATGGCTACACTTCTTTAGGAATGCCCCCACTTACAACCAGGTGGGTGGAACAGGCATGTGACAGAGTGGGGAGCCTGGGCTCAGCTCCTCCCCCTGCCGTTGGTTAATAAACACCCTTTTTCCCCAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000095539-SEMA4G:NM_017893:13
Average complexity
IR-C
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms
No structure available
Features
Disorder rate (Iupred):
C1=0.364 A=NA C2=0.444
Domain overlap (PFAM):
C1:
PF0143720=PSI=PD(26.3=68.2),PF138951=Ig_2=PU(0.1=0.0)
A:
NA
C2:
PF138951=Ig_2=WD(100=31.5)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)