HsaINT1041217 @ hg38
Intron Retention
Gene
ENSG00000095539 | SEMA4G
Description
semaphorin 4G [Source:HGNC Symbol;Acc:HGNC:10735]
Coordinates
chr10:100979102-100979992:+
Coord C1 exon
chr10:100979102-100979271
Coord A exon
chr10:100979272-100979847
Coord C2 exon
chr10:100979848-100979992
Length
576 bp
Sequences
Splice sites
5' ss Seq
GTGGTCAGT
5' ss Score
4.85
3' ss Seq
TGCCCTATGTCCCATTCTAGGAA
3' ss Score
10.75
Exon sequences
Seq C1 exon
GGAGACCTGGGAGGGAAGAAGATCCTGCAGAAGAAGTGGACTTCCTTCCTGAAAGCCCGTCTCATCTGCCACATTCCACTGTATGAGACACTGCGTGGGGTCTGCAGCCTGGATGCTGAAACCTCAAGCCGTACACACTTCTATGCAGCCTTCACGCTGAGCACACAGTG
Seq A exon
GTCAGTGCAGGGACAATCGGGAGGCAAGAAACTGCGGACAGCATAGGGGCTGGAGCAGAGGTCAATGAGGATGAGATAGGATCCACTGTGGGGAGGTCTGGCTGCAAAGTGAGAATTTTTTTTTTTTTTTAAGAGGGAGTCTTGCTCTGTTGCCAGGCTGGAGTGCAGTGGCGCGATCTCGGCTCACTGCAATCTCCGCCTCCCGGGTTCAAGTGATTATCCTGCCTCGGCCTCCCGAGTAGCTGGGACTATAGGCGTGTGCCACCACGCCTGGCTAATTTTTGTATTTTTAATAGAGATGGGGTTTCACTGTGTTGCCCAGGATGGTCTCGATCTCTTGACCTCGTGATCTGCTCGCCTCGGCCTCTCAAAGTGCTGGCAAAGTGAGAATTTTAAGCACATCAAGCTAGGCTAGAGCCAGAGAATGAATGCAGTGGTCCACTGACTCACAGGAGAGGCCCTGTGGGACTATAGCTGGGGTTGGCCAGGGTAACAGTGAGCTTCAGGCTGAGCACGAGTTGGGGGGCAGGCTTGACTCCATGTAACTCACCCCCCTTGCCCTATGTCCCATTCTAG
Seq C2 exon
GAAGACCCTGGAGGCCTCAGCCATCTGCCGCTATGACCTGGCAGAGATCCAGGCTGTCTTTGCAGGACCCTATATGGAATACCAGGATGGTTCCCGGCGCTGGGGTCGCTATGAGGGTGGGGTGCCTGAGCCCCGGCCTGGCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000095539:ENST00000210633:8
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.102
Domain overlap (PFAM):
C1:
PF0140314=Sema=FE(12.9=100)
A:
NA
C2:
PF0140314=Sema=FE(11.1=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGACCTGGGAGGGAAGAAG
R:
CAGGCACCCCACCCTCATAG
Band lengths:
298-874
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains