HsaALTD0005766-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000092421 | SEMA6A
Description
semaphorin 6A [Source:HGNC Symbol;Acc:HGNC:10738]
Coordinates
chr5:116504845-116536428:-
Coord C1 exon
chr5:116536383-116536428
Coord A exon
chr5:116536298-116536382
Coord C2 exon
chr5:116504845-116504982
Length
85 bp
Sequences
Splice sites
5' ss Seq
TTTGTAAGT
5' ss Score
7.4
3' ss Seq
TGTTCTTTACTTTTTGGCAGGGT
3' ss Score
7.52
Exon sequences
Seq C1 exon
GACTCGGGCTCCCCAGGACAATGTCTCTTTCTTCACCAAGCTGATG
Seq A exon
GTAAATATCTGGTTAGCTTCATCTATTTAAAACCAGCCAAGCAGGAATCCTAGTGCTGGAGAGAGGATTCTTTTTTTTTTTGTTT
Seq C2 exon
GGTGAAGTAGAGAAATAAAGTCTCCCCGCTGAACTACTATGAGGTCAGAAGCCTTGCTGCTATATTTCACACTGCTACACTTTGCTGGGGCTGGTTTCCCAGAAGATTCTGAGCCAATCAGTATTTCGCATGGCAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000092421-3-12,4-12-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCCCAGGACAATGTCTCT
R:
GCCATGCGAAATACTGATTGGC
Band lengths:
173-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development