HsaALTD0005785-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000122545 | SEPT7
Description
septin 7 [Source:HGNC Symbol;Acc:1717]
Coordinates
chr7:35840780-35872510:+
Coord C1 exon
chr7:35840780-35840880
Coord A exon
chr7:35840881-35840882
Coord C2 exon
chr7:35872408-35872510
Length
2 bp
Sequences
Splice sites
5' ss Seq
GGTGAGTCT
5' ss Score
-16.24
3' ss Seq
GCCCTTTTTGCTTTTGTCAGCAA
3' ss Score
5.32
Exon sequences
Seq C1 exon
GCTGCGCTCCGCTGGGGCTGGTCGCGGAGGGGGGGAGGGGATGTCGGTCAGTGCGAGATCCGCTGCTGCTGAGGAGAGGAGCGTCAACAGCAGCACCATGG
Seq A exon
GT
Seq C2 exon
CAACAGAAGAACCTTGAAGGCTATGTGGGATTTGCCAATCTCCCAAATCAAGTATACAGAAAATCGGTGAAGAGAGGTTTTGAATTCACGCTTATGGTAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122545-0-7,1-7-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.446 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0073513=Septin=PU(3.6=28.6)
Other Inclusion Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGTCGGTCAGTGCGAGATC
R:
GGGAGATTGGCAAATCCCACA
Band lengths:
106-108
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)