HsaEX0057304 @ hg19
Exon Skipping
Gene
ENSG00000122545 | SEPT7
Description
septin 7 [Source:HGNC Symbol;Acc:1717]
Coordinates
chr7:35840747-35872510:+
Coord C1 exon
chr7:35840747-35840880
Coord A exon
chr7:35851671-35851678
Coord C2 exon
chr7:35872408-35872510
Length
8 bp
Sequences
Splice sites
3' ss Seq
TGCTTGAACCTAGGAGGCAGAGG
3' ss Score
-11.53
5' ss Seq
GCCGTGAGC
5' ss Score
3.48
Exon sequences
Seq C1 exon
GAATCGGCGTAGGCGCCTTTGGAGAATCGGCGGGCTGCGCTCCGCTGGGGCTGGTCGCGGAGGGGGGGAGGGGATGTCGGTCAGTGCGAGATCCGCTGCTGCTGAGGAGAGGAGCGTCAACAGCAGCACCATGG
Seq A exon
AGGTTGCC
Seq C2 exon
CAACAGAAGAACCTTGAAGGCTATGTGGGATTTGCCAATCTCCCAAATCAAGTATACAGAAAATCGGTGAAGAGAGGTTTTGAATTCACGCTTATGGTAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000122545-MICROEX1-1/2
Average complexity
MIC_M
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
Show PDB structure
Features
Disorder rate (Iupred):
C1=0.429 A=0.333 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0073513=Septin=PU(3.6=28.6)
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGTCGGTCAGTGCGAGATC
R:
GGGAGATTGGCAAATCCCACA
Band lengths:
106-114
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)