HsaALTD0005878-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000148341 | SH3GLB2
Description
SH3-domain GRB2-like endophilin B2 [Source:HGNC Symbol;Acc:10834]
Coordinates
chr9:131783370-131784626:-
Coord C1 exon
chr9:131784583-131784626
Coord A exon
chr9:131784561-131784582
Coord C2 exon
chr9:131783370-131783498
Length
22 bp
Sequences
Splice sites
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
3' ss Seq
TGGCTGCTGTCTCCCCACAGGTG
3' ss Score
13.92
Exon sequences
Seq C1 exon
ACAGCACCAAGAACTGGACAGAGAAGATCTTGAGGCAGACAGAG
Seq A exon
GTGCTGCTGCAGCCCAACCCCA
Seq C2 exon
GTGCCCGAGTGGAGGAGTTCCTGTATGAGAAGCTGGACAGGAAGGTCCCCTCAAGGGTCACCAACGGGGAGCTGCTGGCTCAGTACATGGCAGACGCGGCCAGTGAGCTGGGGCCGACCACCCCCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148341-1-2,2-2-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0311413=BAR=FE(16.8=100)
A:
NA
C2:
PF0311413=BAR=FE(15.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGATCTTGAGGCAGACAGA
R:
GTCTGCCATGTACTGAGCCAG
Band lengths:
118-140
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)