RnoALTD0027418-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000017295 | Sh3glb2
Description
SH3 domain-containing GRB2-like endophilin B2 [Source:RGD Symbol;Acc:1305886]
Coordinates
chr3:8919274-8920117:-
Coord C1 exon
chr3:8920005-8920117
Coord A exon
chr3:8919983-8920004
Coord C2 exon
chr3:8919274-8919402
Length
22 bp
Sequences
Splice sites
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
3' ss Seq
AGGCTGCTGTCTCCCTACAGGTG
3' ss Score
11.87
Exon sequences
Seq C1 exon
AAGAGAAGTTTGGCCAAGCTGAGAAGACTGAACTTGATGCCCACTTTGAAAACCTCCTAGCTCGGGCAGACAGCACCAAGAACTGGACGGAGCGGATCCTGAGGCAGACTGAG
Seq A exon
GTGCTGCTGCAGCCCAATCCCA
Seq C2 exon
GTGCTCGAGTGGAGGAGTTCCTGTATGAGAAGCTGGACAGAAAGGTGCCCTCAAGAGTCACCAATGGGGAGCTGCTGGCTCAGTACATGGCAGAGGCAGCCAGCGAACTGGGCCCCAACACTCCCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017295-4-4,5-4-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.102
Domain overlap (PFAM):
C1:
PF0311413=BAR=FE(17.0=100)
A:
NA
C2:
PF0311413=BAR=FE(15.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGAACTGGACGGAGCGGATC
R:
CCATTGGTGACTCTTGAGGGC
Band lengths:
103-125
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]