HsaALTD0005878-2/3 @ hg38
Alternative 5'ss
Gene
ENSG00000148341 | SH3GLB2
Description
SH3 domain containing GRB2 like endophilin B2 [Source:HGNC Symbol;Acc:HGNC:10834]
Coordinates
chr9:129021091-129022347:-
Coord C1 exon
chr9:129022304-129022347
Coord A exon
chr9:129022282-129022303
Coord C2 exon
chr9:129021091-129021219
Length
22 bp
Sequences
Splice sites
5' ss Seq
CCAGTGAGT
5' ss Score
8.28
3' ss Seq
TGGCTGCTGTCTCCCCACAGGTG
3' ss Score
13.92
Exon sequences
Seq C1 exon
ACAGCACCAAGAACTGGACAGAGAAGATCTTGAGGCAGACAGAG
Seq A exon
GTGCTGCTGCAGCCCAACCCCA
Seq C2 exon
GTGCCCGAGTGGAGGAGTTCCTGTATGAGAAGCTGGACAGGAAGGTCCCCTCAAGGGTCACCAACGGGGAGCTGCTGGCTCAGTACATGGCAGACGCGGCCAGTGAGCTGGGGCCGACCACCCCCTATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000148341-8-3,9-3,10-3-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.005
Domain overlap (PFAM):
C1:
PF0311413=BAR=FE(16.8=100)
A:
NA
C2:
PF0311413=BAR=FE(15.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGAAGATCTTGAGGCAGACAGA
R:
GTCTGCCATGTACTGAGCCAG
Band lengths:
118-140
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains