HsaALTD0006037-2/4 @ hg38
Alternative 5'ss
Gene
ENSG00000114923 | SLC4A3
Description
solute carrier family 4 member 3 [Source:HGNC Symbol;Acc:HGNC:11029]
Coordinates
chr2:219628516-219629421:+
Coord C1 exon
chr2:219628516-219628570
Coord A exon
chr2:219628571-219628766
Coord C2 exon
chr2:219629144-219629421
Length
196 bp
Sequences
Splice sites
5' ss Seq
GAGGTGGGC
5' ss Score
6.32
3' ss Seq
CGGATCTCCTGCACCCCCAGTTC
3' ss Score
6.01
Exon sequences
Seq C1 exon
CCGGCCTGGGACCCCGAGAAGCCCAGCCGCAGCTACAGCGAGCGGGACTTTGAGT
Seq A exon
GTGGGTAGCCTGGGGACCCCTAGTGCGGCCGCCCTCGCCACCATCACCTTCATCGCCACCATCACCGCGCTCACCTCCGGCTTGGTCACCCAGTGCCATCCTGTGCCGGACACTGTGCTGGACTCTGTGCTGGGCCACATGCCGTGTTCAGTCATCCTGCCTCCCCCACCCATCGCCTGTCCGCCTGCCTGGGGAG
Seq C2 exon
TTCACCGGCACACATCCCACCACACCCACCACCCGCTCTCAGCGCGCCTGCCTCCACCCCACAAGCTGCGGCGGCTGCCCCCCACCTCTGCCCGGCACACCAGGAGAAAGAGGAAGAAGGAGAAAACCTCTGCTCCTCCCTCCGAGGGGACCCCTCCCATCCAGGAGGAGGGGGGAGCTGGAGTGGATGAGGAAGAGGAGGAAGAGGAGGAAGAGGAAGGAGAATCTGAGGCAGAACCTGTGGAGCCCCCCCACTCAGGGACCCCACAGAAGGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114923-4-8,5-8,6-8,7-8-2/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACAGCGAGCGGGACTTTG
R:
CCTTCCTCTTCCTCCTCTTCCT
Band lengths:
243-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains