HsaALTD0007334-2/2 @ hg38
Alternative 5'ss
Gene
ENSG00000184517 | ZFP1
Description
ZFP1 zinc finger protein [Source:HGNC Symbol;Acc:HGNC:23328]
Coordinates
chr16:75148543-75152966:+
Coord C1 exon
chr16:75148543-75148643
Coord A exon
chr16:75148644-75148662
Coord C2 exon
chr16:75152909-75152966
Length
19 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGCT
5' ss Score
6.52
3' ss Seq
TCCTTTTTCCTCTATTCCAGTTC
3' ss Score
11.05
Exon sequences
Seq C1 exon
CGGCGAGTGGGTGACAGAGCCCCCGTCTCCGCGCGTCTTCGCCGCCCTGCGCCGTGACCCGCTGTGGCACTGGGCCACGAGTGGAGGCTGCGCCCCTCCAG
Seq A exon
GTACGAGAGGGGCTTCCAG
Seq C2 exon
TTCTGCCTTCATAGTTCTCTGCCTTTGCCCAAAACTGCAGAAAATGAACAAATCCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184517-0-2,1-2-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.125
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGACAGAGCCCCCGTCT
R:
AGGCAGAGAACTATGAAGGCAGA
Band lengths:
115-134
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development