HsaEX0072636 @ hg38
Exon Skipping
Gene
ENSG00000184517 | ZFP1
Description
ZFP1 zinc finger protein [Source:HGNC Symbol;Acc:HGNC:23328]
Coordinates
chr16:75148492-75166896:+
Coord C1 exon
chr16:75148492-75148643
Coord A exon
chr16:75152909-75152966
Coord C2 exon
chr16:75166770-75166896
Length
58 bp
Sequences
Splice sites
3' ss Seq
TCCTTTTTCCTCTATTCCAGTTC
3' ss Score
11.05
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GCATGTGCAGTGCTGCGAGCGCGCCGGTGGCCGCCCTTCCCCCACCACCAGCGGCGAGTGGGTGACAGAGCCCCCGTCTCCGCGCGTCTTCGCCGCCCTGCGCCGTGACCCGCTGTGGCACTGGGCCACGAGTGGAGGCTGCGCCCCTCCAG
Seq A exon
TTCTGCCTTCATAGTTCTCTGCCTTTGCCCAAAACTGCAGAAAATGAACAAATCCCAG
Seq C2 exon
GGATCAGTTTCATTCACGGATGTGACTGTGGACTTTACCCAGGAGGAATGGGAACAACTGGACCCCTCTCAGAGGATCCTATACATGGATGTGATGCTGGAGAATTATAGCAACTTACTTTCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184517_MULTIEX1-2/5=C1-5
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.125 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGGGTGACAGAGCCCC
R:
AAGTCCACAGTCACATCCGTG
Band lengths:
132-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development