MmuEX0053011 @ mm10
Exon Skipping
Gene
ENSMUSG00000055835 | Zfp1
Description
zinc finger protein 1 [Source:MGI Symbol;Acc:MGI:99154]
Coordinates
chr8:111643401-111666200:+
Coord C1 exon
chr8:111643401-111643612
Coord A exon
chr8:111658386-111658441
Coord C2 exon
chr8:111666078-111666200
Length
56 bp
Sequences
Splice sites
3' ss Seq
TTCCTTTTCTTTTCTTCCAGCTG
3' ss Score
11.55
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GGCTCAGAGGCATTATGGGAATTGTAGTCCTACACCTCAGCGTCACAGCTCCGAGGACTCTGGGAACGGCCGCTCGCTCCACAAGGTGCACGCTTGCGCAAAAGCGCTAGCGCTCGCCCTTCCCCCACCTGCAGTCGCGAGTGGGTGACAAGAGCCCCCTTCTCCGCGAGCCTCGTGACCCGGAACCGCGAGTGGAGGCTAGACCCCTCCAG
Seq A exon
CTGTGCCTTTGTGCTTCTGTGCCTTCACCCCAACCCAGAAAATGATGGGGTCCCAG
Seq C2 exon
GGATCCGTTTCATTCACTGATGTAACTGTGGACTTCACCCAGGAGGAGTGGGAGCAACTGGACCCCTCGCAGAGGATTCTGTACATGGATGTAATGCTGGAGAACTACAGCAACTTACTTTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000055835_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.120 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
PF0135222=KRAB=PU(3.2=20.0)
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTGACAAGAGCCCCCTTCTC
R:
GTCCAGTTGCTCCCACTCCTC
Band lengths:
132-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types