HsaEX0072636 @ hg19
Exon Skipping
Gene
ENSG00000184517 | ZFP1
Description
zinc finger protein 1 homolog (mouse) [Source:HGNC Symbol;Acc:23328]
Coordinates
chr16:75182421-75200794:+
Coord C1 exon
chr16:75182421-75182541
Coord A exon
chr16:75186807-75186864
Coord C2 exon
chr16:75200668-75200794
Length
58 bp
Sequences
Splice sites
3' ss Seq
TCCTTTTTCCTCTATTCCAGTTC
3' ss Score
11.05
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
CGCCCTTCCCCCACCACCAGCGGCGAGTGGGTGACAGAGCCCCCGTCTCCGCGCGTCTTCGCCGCCCTGCGCCGTGACCCGCTGTGGCACTGGGCCACGAGTGGAGGCTGCGCCCCTCCAG
Seq A exon
TTCTGCCTTCATAGTTCTCTGCCTTTGCCCAAAACTGCAGAAAATGAACAAATCCCAG
Seq C2 exon
GGATCAGTTTCATTCACGGATGTGACTGTGGACTTTACCCAGGAGGAATGGGAACAACTGGACCCCTCTCAGAGGATCCTATACATGGATGTGATGCTGGAGAATTATAGCAACTTACTTTCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000184517_MULTIEX1-2/4=C1-4
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0135222=KRAB=WD(100=100.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGTGGGTGACAGAGCCCC
R:
AAGTCCACAGTCACATCCGTG
Band lengths:
132-190
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)