RnoEX0101013 @ rn6
Exon Skipping
Gene
ENSRNOG00000019059 | Zfp1
Description
zinc finger protein 1 [Source:RGD Symbol;Acc:1565049]
Coordinates
chr19:43853462-43882361:+
Coord C1 exon
chr19:43853462-43853562
Coord A exon
chr19:43873142-43873197
Coord C2 exon
chr19:43882261-43882361
Length
56 bp
Sequences
Splice sites
3' ss Seq
TTCCTTTTCTTTTCTTCCAGTTG
3' ss Score
11.27
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
TGGTTGCCCTTCCCCCACCTACAGTCGCGAGTGGGTGACAGAGCCCCCTTCTCCGCGAGCCTCGTGACCCGGAACCGCGAGTGGAGGCTAAACCCCTCCAG
Seq A exon
TTGTGCCTTTGTGCTTCTGTGCCTTTACCCCAACCCAGAAAATGATGGGGTCCCAG
Seq C2 exon
GGGTCCGTTTCATTCACTGATGTGACTGTGGACTTCTCCCAAGAGGAGTGGGAGCAGCTGGACCCCTCCCAGAGGATTCTCTACATGGATGTGATGTTGGA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000019059-'0-2,'0-1,1-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTTCCCCCACCTACAGTC
R:
TGGGAGAAGTCCACAGTCACA
Band lengths:
136-192
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]