HsaALTD0007373-1/2 @ hg38
Alternative 5'ss
Gene
ENSG00000172262 | ZNF131
Description
zinc finger protein 131 [Source:HGNC Symbol;Acc:HGNC:12915]
Coordinates
chr5:43161249-43161773:+
Coord C1 exon
chr5:43161249-43161606
Coord A exon
NA
Coord C2 exon
chr5:43161709-43161773
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTAGAA
5' ss Score
6.68
3' ss Seq
AATTGTTTTACCATTTTAAGGAG
3' ss Score
5.63
Exon sequences
Seq C1 exon
GAACAAAGAAAACTCAGCTCCCTTAGAGGAAAATACCACAGGAAAAAATGAGGCCAAAAAAAGGAAGATTGCAGAAACTTCAAATGTTATCACTGAGTCATTGCCATCTGCAGAATCAGAACCTGTTGAAATTGAGGTAGAGATTGCCGAAGGCACCATTGAAGTGGAAGATGAAGGCATCGAAACATTAGAGGAAGTGGCTTCTGCCAAGCAGTCCGTAAAGTACATACAGAGCACAGGTTCCTCTGATGATTCTGCTCTAGCACTGTTGGCAGATATTACCAGCAAGTACCGTCAAGGTGACAGAAAAGGGCAGATTAAAGAAGATGGCTGTCCATCTGACCCCACGAGCAAACAG
Seq A exon
NA
Seq C2 exon
GAGCACATGAAATCACACTCCACTGAGAGTTTCAAGTGTGAAATATGCAATAAACGATATCTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172262-54-56,55-56-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.650 A=NA C2=0.143
Domain overlap (PFAM):
C1:
PF0065126=BTB=PD(4.7=4.2)
A:
NA
C2:
PF121713=zf-C2H2_jaz=WD(100=29.3),PF134651=zf-H2C2_2=PU(38.5=13.3)
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCAAGGTGACAGAAAAGGGCA
R:
TGAAACTCTCAGTGGAGTGTGA
Band lengths:
99-106
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains