Special

HsaALTD0007373-2/2 @ hg38

Alternative 5'ss

Gene
ENSG00000172262 | ZNF131
Description
zinc finger protein 131 [Source:HGNC Symbol;Acc:HGNC:12915]
Coordinates
chr5:43161249-43161773:+
Coord C1 exon
chr5:43161249-43161606
Coord A exon
chr5:43161607-43161613
Coord C2 exon
chr5:43161709-43161773
Length
7 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTG
5' ss Score
7.76
3' ss Seq
AATTGTTTTACCATTTTAAGGAG
3' ss Score
5.63
Exon sequences
Seq C1 exon
GAACAAAGAAAACTCAGCTCCCTTAGAGGAAAATACCACAGGAAAAAATGAGGCCAAAAAAAGGAAGATTGCAGAAACTTCAAATGTTATCACTGAGTCATTGCCATCTGCAGAATCAGAACCTGTTGAAATTGAGGTAGAGATTGCCGAAGGCACCATTGAAGTGGAAGATGAAGGCATCGAAACATTAGAGGAAGTGGCTTCTGCCAAGCAGTCCGTAAAGTACATACAGAGCACAGGTTCCTCTGATGATTCTGCTCTAGCACTGTTGGCAGATATTACCAGCAAGTACCGTCAAGGTGACAGAAAAGGGCAGATTAAAGAAGATGGCTGTCCATCTGACCCCACGAGCAAACAG
Seq A exon
GTAGAAG
Seq C2 exon
GAGCACATGAAATCACACTCCACTGAGAGTTTCAAGTGTGAAATATGCAATAAACGATATCTTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172262-54-56,55-56-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact





	

	
ORF disruption when splice site is used (sequence inclusion)





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.650 A=NA C2=0.143
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF0065126=BTB=PD(4.7=4.2)

							
A:
NA

							
C2:
PF121713=zf-C2H2_jaz=WD(100=29.3),PF134651=zf-H2C2_2=PU(38.5=13.3)

						

					

				








    
Main Inclusion Isoform:
ENSP00000425623





     
                   









    
Main Skipping Isoform:
ENSP00000305804





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
ENSP00000421246, ENSP00000422079, ENSP00000422659, ENSP00000423945, ENSP00000424771
  



Associated events







Other assemblies


hg19




Conservation


Mouse
(mm10)
chr13:119776085-119776336 
ALTERNATIVE
MmuALTD1037152-4/4
(Zfp131)
Mouse
(mm9)
No conservation detected
Rat
(rn6)
chr2:52514540-52514904 
ALTERNATIVE
RnoALTD0034391-2/2
(Zfp131)
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
chrZ:13479625-13479626 
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
chr8:31402070-31402071 
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
GTCAAGGTGACAGAAAAGGGCA

				
R: 
TGAAACTCTCAGTGGAGTGTGA

				
Band lengths: 
99-106

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • The Cancer Genome Atlas (TCGA)
  • Autistic and control brains
  • Pre-implantation embryo development





Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"