MmuALTD1037152-4/4 @ mm10
Alternative 5'ss
Gene
ENSMUSG00000094870 | Zfp131
Description
zinc finger protein 131 [Source:MGI Symbol;Acc:MGI:1919715]
Coordinates
chr13:119775767-119776336:-
Coord C1 exon
chr13:119776188-119776336
Coord A exon
chr13:119776085-119776187
Coord C2 exon
chr13:119775767-119775989
Length
103 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTG
5' ss Score
7.76
3' ss Seq
AATTGTTTTACCATTTTAAGGAA
3' ss Score
6.78
Exon sequences
Seq C1 exon
AATCAGAACCTGTGGAAATTGAGGTGGAGATTGCTGAGGGCACAATTGAAGTAGAAGATGAAGGCATCGAAGCTTTGGAGGAAATGGCTTCTGCCAAGCAGTCTATAAAGTACATACAGAGCACAGGCTCCTCCGATGATTCCGCTCTG
Seq A exon
GCGTTGTTGGCAGATATCACCAGCAAGTACCGTCAAGGTGAAAGCAAAGGACAGATTAGCGAAGATGACTGTGCATCTGACCCCATAAGCAAACAGGTAGAAG
Seq C2 exon
GAACACATGAAATCACACTCCACTGAGAGTTTCAAGTGTGAAATATGCAATAAAAGGTATCTTCGAGAGAGTGCGTGGAAACAGCACCTTAACTGTTACCACCTTGAAGAAGGTGGAGTAAGTAAGAAGCAAAGAACTGGGAAAAAAATTCACATATGCCAGTACTGTGACAAACAGTTTGACCACTTTGGACACTTTAAAGAACACCTTCGAAAACATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000094870-17-17,18-17,19-17,20-17-4/4
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.608 A=NA C2=0.139
Domain overlap (PFAM):
C1:
PF0065126=BTB=PD(4.7=4.2)
A:
NA
C2:
PF0065126=BTB=PD(4.7=2.2),PF121713=zf-C2H2_jaz=WD(100=9.6),PF134651=zf-H2C2_2=PU(38.5=4.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAAGCTTTGGAGGAAATGGC
R:
TGTTTGTCACAGTACTGGCAT
Band lengths:
258-361
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types