RnoALTD0034391-2/2 @ rn6
Alternative 5'ss
Gene
ENSRNOG00000015925 | Zfp131
Description
zinc finger protein 131 [Source:RGD Symbol;Acc:1307638]
Coordinates
chr2:52514222-52514904:-
Coord C1 exon
chr2:52514547-52514904
Coord A exon
chr2:52514540-52514546
Coord C2 exon
chr2:52514222-52514444
Length
7 bp
Sequences
Splice sites
5' ss Seq
AAGGTATTG
5' ss Score
7.76
3' ss Seq
AATTGTTTTACCATTTTAAGGAA
3' ss Score
6.78
Exon sequences
Seq C1 exon
GAACAAAGAAAACTCAGCTCCATTAGAGGAAACTACTACAGGAAAAAATGAGGCAAAAAAAAGAAAGATCGCAGAAACTTCCAATGTTATCACCGAGTCCTTGCCATCTGCAGAATCAGAACCTGTGGAAATCGAGGTGGAGATTGCTGAAGGCACAATTGAAGTAGAAGACGAAGGCATTGCAGCTTTGGAGGAAATGGCTTCTGGCAAGCAGTCTATAAAGTACATACAGAGCACAGGCTCCTCCGATGACTCTGCTCTAGCACTGTTGGCAGATATCACCAGCAAGTACCGTCCAGGCGAAAGCAAAGGACAGATTAGCGAAGATGACTGTGCATCTGACCCCATAAGCAAACAG
Seq A exon
GTAGAAG
Seq C2 exon
GAACACATGAAATCACACTCCACTGAGAGTTTCAAGTGTGAAATATGCAATAAAAGGTATCTTCGAGAGAGTGCATGGAAACACCACCTAAACTGTTACCACCTTGAAGAAGGTGGAGTAAGTAAGAAGCAAAGAACTGGGAAAAAAATTCACACATGCCAGTATTGTGAGAAACAGTTTGACCACTTTGGACACTTTAAAGAACACCTTCGAAAACATACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000015925-7-6,8-6-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
ORF disruption when splice site is used (sequence inclusion)
No structure available
Features
Disorder rate (Iupred):
C1=0.625 A=NA C2=0.115
Domain overlap (PFAM):
C1:
PF0065126=BTB=PD(4.7=4.2)
A:
NA
C2:
PF0065126=BTB=PD(4.7=2.2),PF128742=zf-met=WD(100=9.2),PF134651=zf-H2C2_2=PU(38.5=4.4)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCATCTGACCCCATAAGCA
R:
TTCCATGCACTCTCTCGAAGA
Band lengths:
106-113
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]