HsaALTD0007375-1/6 @ hg38
Alternative 5'ss
Gene
ENSG00000167635 | ZNF146
Description
zinc finger protein 146 [Source:HGNC Symbol;Acc:HGNC:12931]
Coordinates
chr19:36215055-36218195:+
Coord C1 exon
chr19:36215055-36215155
Coord A exon
NA
Coord C2 exon
chr19:36218122-36218195
Length
0 bp
Sequences
Splice sites
5' ss Seq
CGGGTCAGT
5' ss Score
6.55
3' ss Seq
TTTTTTTTTTTAAATTAAAGGAA
3' ss Score
7.38
Exon sequences
Seq C1 exon
ACCGAGGCGGGCCGCGTCGCGGAGACTTCTGGGAGTGCTTCCTCGCTCTCCGAGTGCGCAAGCGCAGCGCACCGAGTGGACATTTTGGTCTTTGTCCGCGG
Seq A exon
NA
Seq C2 exon
GAAGACATAGGCCAAGGAGCCAGACTTCCTGTGTTAACTCCTTCCTCTGCCACTTTTTACCTTGGGGACCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167635-0-0,1-0,2-0,3-0,4-0,5-0-1/6
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGAGACTTCTGGGAGTGCTT
R:
AGGAAGTCTGGCTCCTTGGC
Band lengths:
112-146
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains