HsaEX0073073 @ hg38
Exon Skipping
Gene
ENSG00000167635 | ZNF146
Description
zinc finger protein 146 [Source:HGNC Symbol;Acc:HGNC:12931]
Coordinates
chr19:36215133-36228819:+
Coord C1 exon
chr19:36215133-36215196
Coord A exon
chr19:36218122-36218195
Coord C2 exon
chr19:36228748-36228819
Length
74 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTTTTAAATTAAAGGAA
3' ss Score
7.38
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
GACATTTTGGTCTTTGTCCGCGGGTCAGTACGGCCCCTGGGTCCACGTGGCGCGAAAGTAGGAG
Seq A exon
GAAGACATAGGCCAAGGAGCCAGACTTCCTGTGTTAACTCCTTCCTCTGCCACTTTTTACCTTGGGGACCTCAG
Seq C2 exon
TTAATATGATCCTCTGTTGAAGCAAGAAGACAAACTGTATGGTGGAGAAAGAAGTGGGAAGGATCTGCGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000167635_MULTIEX1-1/4=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACATTTTGGTCTTTGTCCGCG
R:
CGCGCAGATCCTTCCCACTT
Band lengths:
135-209
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development