HsaALTD0007394-2/3 @ hg38
Alternative 5'ss
Gene
ENSG00000159917 | ZNF235
Description
zinc finger protein 235 [Source:HGNC Symbol;Acc:HGNC:12866]
Coordinates
chr19:44286350-44298903:-
Coord C1 exon
chr19:44298820-44298903
Coord A exon
chr19:44298808-44298819
Coord C2 exon
chr19:44286350-44289196
Length
12 bp
Sequences
Splice sites
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
3' ss Seq
TATTCTCTCTATCCTTTCAGGAG
3' ss Score
10.88
Exon sequences
Seq C1 exon
GACATCAGTCCTTCAAACCAGATATGATATCCCAGTTGGAGAGGGAAGAAAAGCTTTGGATGAAGGAGCTTCAAACCCAAAGAG
Seq A exon
GTAAGCATTCAG
Seq C2 exon
GAGACAGGAATCAAAATGAGATGGCAACTCTTCACAAAGCAGGATTAAGGTGCTTTTCACTGGGAGAGCTTTCATGCTGGCAAATCAAGAGACACATTGCGAGCAAATTAGCCAGAAGTCAAGACTCCATGATAAATATTGAAGGAAAGAGCTCTCAGTTCCCCAAGCACCATGATTCCCCCTGTCAAGTGGGAGCAGGAGAATCTATTCAAGCTTCTGTGGATGACAACTGTCTAGTGAATCACATAGGGGATCATTCCAGTATCATTGAAAATCAAGAATTTCCAACTGGGAAAGTTCCGAATTCTTGGAGTAAAATATATCTGAATGAGACACAGAATTATCAGAGAAGTTGTAAGCAGACTCAGATGAAAAACAAACTATGTATATTTGCTCCATATGTTGACATTTTCAGTTGTATTTCACACCACCATGATGATAATATAGTGCACAAAAGAGATAAAGTTCATAGCAATAGTGATTGTGGTAAAGATACCCTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000159917-4-7,5-7,6-7-2/3
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.197 A=NA C2=0.124
Domain overlap (PFAM):
C1:
PF0135222=KRAB=PD(0.1=0.0)
A:
NA
C2:
PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.8),PF134651=zf-H2C2_2=WD(100=3.9),PF134651=zf-H2C2_2=WD(100=3.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGAAGGAGCTTCAAACCCAAAGA
R:
CCAGCATGAAAGCTCTCCCAG
Band lengths:
104-116
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains