HsaALTD0007397-2/2 @ hg19
Alternative 5'ss
Gene
ENSG00000198105 | ZNF248
Description
zinc finger protein 248 [Source:HGNC Symbol;Acc:13041]
Coordinates
chr10:38145363-38147033:-
Coord C1 exon
chr10:38146933-38147033
Coord A exon
chr10:38146693-38146932
Coord C2 exon
chr10:38145363-38145460
Length
240 bp
Sequences
Splice sites
5' ss Seq
GGGGTAGGC
5' ss Score
5.3
3' ss Seq
TTAATTTTTCTGTGTCACAGAAC
3' ss Score
9.13
Exon sequences
Seq C1 exon
GCATGTGCATCCCCGCCTCCCGCTCCAGGCGAGTCCTTCCCTGGACTCCAGTCCCTTGTGGGAAACAATCCCTCGCCTCCGGAGGCGGCGAGGAGCGGCGG
Seq A exon
GTGAGCCCCGGAGCACTGGGCGAGGGCCAGGGGGTCCCCGCGCTGCCCTGAAGGCGGGCGGGCGGCGGCTAGACCTCGGCGGTGGGGAGGGACCCCTGGCGCCTGCGGCGACGGTGGGACGAGGGCGTCTCTGTCAGAAGGGGATGAGGTCTGGCGTGGGAACGCGAGTTCCGGGGCTCCCGGGGGTCCGTATGCGTCCAGTCCCTGCGCCTGGCGCTCAGCGAAGTCCTGTAGCACGGG
Seq C2 exon
AACCTAAATTGGTAATAAATCAATAAGAAATATTTACATTCACTCAGTGAAAAGTGTCATGTCTGAGCTCAGCATATATCGGAGCCACACATGGACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198105-0-4,1-4-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGTGCATCCCCGCCTC
R:
TGTCCATGTGTGGCTCCGATA
Band lengths:
197-437
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)