HsaINT0186577 @ hg19
Intron Retention
Gene
ENSG00000198105 | ZNF248
Description
zinc finger protein 248 [Source:HGNC Symbol;Acc:13041]
Coordinates
chr10:38145363-38146486:-
Coord C1 exon
chr10:38146113-38146486
Coord A exon
chr10:38145461-38146112
Coord C2 exon
chr10:38145363-38145460
Length
652 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
3' ss Seq
TTAATTTTTCTGTGTCACAGAAC
3' ss Score
9.13
Exon sequences
Seq C1 exon
CAATTATCCACGGGAGACTCGGTTTTCCTCTCTGTAAATTACGGATATTAGGAATACTTGCCGCCTGGGGTTGTTTTGAGCACTTTCATTGTTTAGGTGCTGTATTTATTGGGTGTGCGTTCCCTGGGAGAGCCCGAGGGAGACGGCTCCTGCACCGGCCCCAAGGGCCTCTCTGCCCGTGGAGTGCAGGAGCGAAGGGGCTGGCCTAGCTGACCACCAGGGCCCCTGCTGGCTCTGACCGCCCTCCTATCCCAAGTAATTATTTACACGTTTCGCGTTCGCTTATGTATTATGTGTAATCATGGCACAGTATCCTGAAGCCGTCGGAGTCTGTGTGCTGGTGCAAGGTCTGGGACAAATTTAAGAAGAGAGAG
Seq A exon
GTGAGCTGGAGCTGAGGGGTGGGCGCGCAGGCTAACAGGAACGTCACCTCTGGAGAGTCTGAGGGCAGGGACGGGTGAAAGGCTCACGGCCACAGCGAAAGAAATGCTGTTATCACCCCTCCGCGAACACCGGGCACATCCAGATGAGCTGCTGAGCTTCCTCCTCTCTTGGCCTGATATCCCCGCCGGATGGTAGTGCAGTCAGGTCATACTTGGGTTATCTGTTTTGACCTTATTTGAAAGATGGAAAAACAAAATTGAGTTTGAGGAGGTGAGTAGTTCAGATCTTGTCATTCCTTAGAGGCAGAACTGAGATTAGAAGTCAAGTCTGCAGTTTCCCGAGCCACTGCTGCCCATTTTGTTACTCTATATCACAGTTTCTCATTAAAAGATCCTTTTGAGGAATTGTTAGCAAGTTAGAACAAACATTTTTAAACTTGCATTTAACATCCTATCCCTTTTTTTAGAGGTCTTTTGCATTATCTAACCTCAGGGCATTAATGGTGTTAACAGGTAAACAGATAAACAATATGGCCTCAGTTTTTTTTTTTCCCTACAAGGAATTTTGACAAACCCATAGTGTTTTTTCCTTCAGATTACTGTTAACTTGTTAAACTCATCTTTTCATGTTTTTAATTTTTCTGTGTCACAG
Seq C2 exon
AACCTAAATTGGTAATAAATCAATAAGAAATATTTACATTCACTCAGTGAAAAGTGTCATGTCTGAGCTCAGCATATATCGGAGCCACACATGGACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198105-ZNF248:NM_021045:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTATTGGGTGTGCGTTCCCTG
R:
TGCTGAGCTCAGACATGACAC
Band lengths:
343-995
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)