HsaINT0186577 @ hg38
Intron Retention
Gene
ENSG00000198105 | ZNF248
Description
zinc finger protein 248 [Source:HGNC Symbol;Acc:HGNC:13041]
Coordinates
chr10:37856435-37858106:-
Coord C1 exon
chr10:37858005-37858106
Coord A exon
chr10:37856533-37858004
Coord C2 exon
chr10:37856435-37856532
Length
1472 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGC
5' ss Score
8.19
3' ss Seq
TTAATTTTTCTGTGTCACAGAAC
3' ss Score
9.13
Exon sequences
Seq C1 exon
CGCATGTGCATCCCCGCCTCCCGCTCCAGGCGAGTCCTTCCCTGGACTCCAGTCCCTTGTGGGAAACAATCCCTCGCCTCCGGAGGCGGCGAGGAGCGGCGG
Seq A exon
GTGAGCCCCGGAGCACTGGGCGAGGGCCAGGGGGTCCCCGCGCTGCCCTGAAGGCGGGCGGGCGGCGGCTAGACCTCGGCGGTGGGGAGGGACCCCTGGCGCCTGCGGCGACGGTGGGACGAGGGCGTCTCTGTCAGAAGGGGATGAGGTCTGGCGTGGGAACGCGAGTTCCGGGGCTCCCGGGGGTCCGTATGCGTCCAGTCCCTGCGCCTGGCGCTCAGCGAAGTCCTGTAGCACGGGGTAGGCAATGCGCACTGGCCCGAAGGGGAGGGAACTGGCTGCGGGGAGGGGACAGCACGCGCGTGCGTAGCGTGTGACGTTTGTTGTGCGCGTGCGCATGGCGTTTGATGTGTGCGTGTGCGCTTTTTGTGCCCTGAGCCCGCGGGGAGGAGGCGGGGCTGCGGGGGAGAGCGACTGCGCCAGGTCCGCGACAAATGAATTAGACACAATTATCCACGGGAGACTCGGTTTTCCTCTCTGTAAATTACGGATATTAGGAATACTTGCCGCCTGGGGTTGTTTTGAGCACTTTCATTGTTTAGGTGCTGTATTTATTGGGTGTGCGTTCCCTGGGAGAGCCCGAGGGAGACGGCTCCTGCACCGGCCCCAAGGGCCTCTCTGCCCGTGGAGTGCAGGAGCGAAGGGGCTGGCCTAGCTGACCACCAGGGCCCCTGCTGGCTCTGACCGCCCTCCTATCCCAAGTAATTATTTACACGTTTCGCGTTCGCTTATGTATTATGTGTAATCATGGCACAGTATCCTGAAGCCGTCGGAGTCTGTGTGCTGGTGCAAGGTCTGGGACAAATTTAAGAAGAGAGAGGTGAGCTGGAGCTGAGGGGTGGGCGCGCAGGCTAACAGGAACGTCACCTCTGGAGAGTCTGAGGGCAGGGACGGGTGAAAGGCTCACGGCCACAGCGAAAGAAATGCTGTTATCACCCCTCCGCGAACACCGGGCACATCCAGATGAGCTGCTGAGCTTCCTCCTCTCTTGGCCTGATATCCCCGCCGGATGGTAGTGCAGTCAGGTCATACTTGGGTTATCTGTTTTGACCTTATTTGAAAGATGGAAAAACAAAATTGAGTTTGAGGAGGTGAGTAGTTCAGATCTTGTCATTCCTTAGAGGCAGAACTGAGATTAGAAGTCAAGTCTGCAGTTTCCCGAGCCACTGCTGCCCATTTTGTTACTCTATATCACAGTTTCTCATTAAAAGATCCTTTTGAGGAATTGTTAGCAAGTTAGAACAAACATTTTTAAACTTGCATTTAACATCCTATCCCTTTTTTTAGAGGTCTTTTGCATTATCTAACCTCAGGGCATTAATGGTGTTAACAGGTAAACAGATAAACAATATGGCCTCAGTTTTTTTTTTTCCCTACAAGGAATTTTGACAAACCCATAGTGTTTTTTCCTTCAGATTACTGTTAACTTGTTAAACTCATCTTTTCATGTTTTTAATTTTTCTGTGTCACAG
Seq C2 exon
AACCTAAATTGGTAATAAATCAATAAGAAATATTTACATTCACTCAGTGAAAAGTGTCATGTCTGAGCTCAGCATATATCGGAGCCACACATGGACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198105:ENST00000395874:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CATGTGCATCCCCGCCTC
R:
GTGTCCATGTGTGGCTCCGAT
Band lengths:
198-1670
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains