BtaINT0165105 @ bosTau6
Intron Retention
Gene
ENSBTAG00000013592 | ZNF248
Description
zinc finger protein 248 [Source:HGNC Symbol;Acc:HGNC:13041]
Coordinates
chr28:13223728-13225562:+
Coord C1 exon
chr28:13223728-13223818
Coord A exon
chr28:13223819-13225416
Coord C2 exon
chr28:13225417-13225562
Length
1598 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGC
5' ss Score
8.19
3' ss Seq
AATAAATCTTCCCAACCTAGGGA
3' ss Score
6.48
Exon sequences
Seq C1 exon
GCCTTCTGCTGCTGGCTCGTCCTTCCGCGGCCTCCAGCCCCTCGTGGGAAACAATCCCTATCCTTCAGGTCCACGGGCGAGGGAGCTGCGG
Seq A exon
GTGAGCCCCGGAGGGTGGGGGCGAGGGCCGAGCGGGCTCCGCGCGACTGGGAGAGCCGGCCGAGGCAGCGGTGCCGGGTGGTGGGTTGGAGCCCCGCGAACACTGCGTGACCCCGGGAGTCTGCAGCGTCTGCAGAACTGAAGGGACGGCAGGCGGGGGCGCTTCCGACTTAAGGGGCCAGAGTCCCGTGTGGGAACGCGGCCTCTCAGGCTCACTCGGTCTGCAGGTGTTCCGCCCCTCAGCGGAGCGGGCGGCGCTGTCCTGTGGCCGCGGGTGGGGAGTGCGCGTGCGTGAAGTGTGAGCTGGGCCCACGGGGGTGGGGGGGCGGCGGACAGGAGGTAGGGGAAGAGCGATTGCGCCTGTGTGACATGTTTGTGCGCACTTCACGTAGTGACGTATACGTCTCTCCTGCGCCAGGCTTACGGGGAGCCGGGAGGCTGTAGGAGACCATTGTCTCCTGCAGGGCCCAGAAATAAATGAATTTCCCGGACCAAATTGCCGCCTAGAGCCTTGGTTTTCTTATCTGTAAAATGCAGACCTCTATAGTGCTTGCCTCTTTGGGTTGTTTTGAGCGCCCACGTTTTGTCAGCTGCTGTTGTATTTGTTCTGTATAGGCGGCTGGAGCTTGGACCCCTCTGTTAAGTCGTTTGTGAAATGGATTGGAAGGGGCTGGACCACCTAGCCACCAAAGCCTTTTCCTGGCTCTGTTAACATTACTCGGATCCTAAGTTATTATTTGTTATATCTTCATTTGTTATTTGTTGTATATAATCATGACACGGTGTCCTGAAGCCATCGAAGGCTGTGTGATGGTGGAAGGTCTGGGACAAATTTAAGAAGAGAGGTGAGCTGGAGATGAGCGGGGTGGGCACACAGGCTACACAGGAAATGTCACCTCTTTAGAAATTTGTGAAGCCATAGTTCGGGTTGAAAGGCTCACCAGCCATAGTTAAAATTCTGTCATTATCCGAGCCTAACACCTCTTCCTCCTAACTCTCCATTCACCTTTTCCTGAGGTTAGCTGCCCTCGAGCAGTGTTCCATTATTGATGGCTTCTAGAGAAATGCTGAGATTCCTGCTCCCAGGATGGTAGTGCAGACAGGTCCTTTTTGGGTTATCAGTTTCTTATTGAAAGATGCAAAAAGAAATGAGCCCGAGAAGATGACTGGCTCAGATCATGCAGTTTGTTAGTGACAGAATCACAGTTGAAAGTCAGGTCTGCAGATTCTTGGGCCACAGCCCATTTTGTCATTTTGTTAGGTCAGAGTTAGTTTTTTATTAAAAGATCCTTTTGAAAATTGTAAGCAGCTTAGAACAGACTTTTTTAAAAAATAAATCTTGCCTTAAACACTCCCATCCCTTTTTTCAGAGGTTTCTTTGATTATCTGATCTCATAGGATTAATGGTGTCAGCAGATGAGAGTCAGATAGGATTAGTGACTAAACAGCAGTGAGAAGGTGTTTTTACCCCCTAGAACCTCAGTTATGACAAATCCCTAGTGTATCCTTTACTTTACTGTTCTGTGTTAAAAATCCTCTCATGTTTTTAATTTTTCTGTGTTACAAAACCTAAATTGGTAATAAATCTTCCCAACCTAG
Seq C2 exon
GGATCGAACCCAGGTCTCCAGCATTCTTTATGGACTGAGCCACCAGGGAAACCCGGTAATAAATCAGTAAGAAGCAAAAGTTTACATTCACTCGGTGAAAAGTATCAGGTCTAAGGTCAACATAAATGGGAGCCACACATGAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013592:ENSBTAT00000025240:1
Average complexity
IR
Mappability confidence:
NA
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCTGCTGCTGGCTCGTC
R:
GCTCATGTGTGGCTCCCATTT
Band lengths:
233-1831
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]