MmuINT0178801 @ mm9
Intron Retention
Gene
ENSMUSG00000030145 | Zfp248
Description
zinc finger protein 248 [Source:MGI Symbol;Acc:MGI:1919970]
Coordinates
chr6:118404695-118405524:-
Coord C1 exon
chr6:118405434-118405524
Coord A exon
chr6:118404930-118405433
Coord C2 exon
chr6:118404695-118404929
Length
504 bp
Sequences
Splice sites
5' ss Seq
CGGGTGAGC
5' ss Score
8.19
3' ss Seq
TTTTTTTTTTTATTTTTAAGCTA
3' ss Score
9.86
Exon sequences
Seq C1 exon
CTGCAGTCCTGCTCCTGGTCCATCCGTGGCCTCGCGTACCTCCTGGGAAACAACTCCTGGCCTTCGGCACGGTGCACTGCAGGAGCGGCGG
Seq A exon
GTGAGCCTTAGACAGCATCAAGGGCGGAGGGTTCTGGGAGCTCGGGCCATCCTGGTCGCTGTTGGCAGCAACCAGGGACCAGCGGGGTGGAGGGCTGTATGGGGAAACGCCGGGGTGCGCTGGGACTCCATGGCTCGGGCTTGCGGGATCCGGATAGTCCCGCACTTCTGCAGAGCTAATCTAGGGCCTCTAGCTCGTGCTACGCCTGCGCATTTTGCCCACTAGGCGGGGAAGATGCGGGGTGGTTGGGCGGAACCCTGAGGAGTTGACTCACGCATGGCGCGAGCGTGACGCGGTGACGCATCCGTTCTCTGGCTGCTGGGGCTAGATGCTGGGATGTGGGGGGCGAGCGGGTAAGCCAGGTCCCGAGTGAATGAATTACTGGGACAGAATAACCTACCCGAGACTCGGTTTCCTTTTGTGCACAGTGTGACTATTACGAATACTTGCTGCAATTTTCTTTTCTTTTCTTTTTTCTTTTTCTTTTTTTTTTTTATTTTTAAG
Seq C2 exon
CTACTACTAGGGAGCCCACCCTCGCAGGGGGCCTTTGGACTGGTCCCTAGGGCGCAGTGTTTGGAGTGGAAGAGGAAAGTGGTTAGCTAGCCACCAAACCTCCTGCCCCCTCACACACCCGGGATCCCAGTTCTGAATTTGGTTCTCGCTCATGTGTTTTGTGAAAATGACAGTGTCCTGAAACCATGGAAGACTGTGTGCTCGCCGAAAGTCTGGGACAAGTTTAAGGAGAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000030145-Zfp248:NM_028335:1
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
No protein impact description available
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTCCTGCTCCTGGTCCATC
R:
TCTCTCCTTAAACTTGTCCCAGACT
Band lengths:
321-825
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: