HsaEX1044921 @ hg38
Exon Skipping
Gene
ENSG00000198105 | ZNF248
Description
zinc finger protein 248 [Source:HGNC Symbol;Acc:HGNC:13041]
Coordinates
chr10:37856435-37858106:-
Coord C1 exon
chr10:37858005-37858106
Coord A exon
chr10:37857185-37857248
Coord C2 exon
chr10:37856435-37856532
Length
64 bp
Sequences
Splice sites
3' ss Seq
TATGTGTAATCATGGCACAGTAT
3' ss Score
1.91
5' ss Seq
GAGGTGAGC
5' ss Score
8.7
Exon sequences
Seq C1 exon
CGCATGTGCATCCCCGCCTCCCGCTCCAGGCGAGTCCTTCCCTGGACTCCAGTCCCTTGTGGGAAACAATCCCTCGCCTCCGGAGGCGGCGAGGAGCGGCGG
Seq A exon
TATCCTGAAGCCGTCGGAGTCTGTGTGCTGGTGCAAGGTCTGGGACAAATTTAAGAAGAGAGAG
Seq C2 exon
AACCTAAATTGGTAATAAATCAATAAGAAATATTTACATTCACTCAGTGAAAAGTGTCATGTCTGAGCTCAGCATATATCGGAGCCACACATGGACAC
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000198105_MULTIEX2-1/6=C1-2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAACAATCCCTCGCCTCCG
R:
TGTCCATGTGTGGCTCCGATA
Band lengths:
137-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains