HsaALTD0007441-1/2 @ hg19
Alternative 5'ss
Gene
ENSG00000147124 | ZNF41
Description
zinc finger protein 41 [Source:HGNC Symbol;Acc:13107]
Coordinates
chrX:47326809-47342623:-
Coord C1 exon
chrX:47342523-47342623
Coord A exon
NA
Coord C2 exon
chrX:47326809-47327159
Length
0 bp
Sequences
Splice sites
5' ss Seq
CAGGTCGGA
5' ss Score
5.59
3' ss Seq
CGAACTTTTCTCTTCCGCAGCAT
3' ss Score
9.36
Exon sequences
Seq C1 exon
TCCTGGCCTAAATCTGACACGCACGACTCCCCCCGCGGCAACTGCACAGGTTCGGTGACAGCCGAGACGCCGAGTGTTTCCCGCAGCCGGCCGGGGTCCAG
Seq A exon
NA
Seq C2 exon
CATCCAGCACAGTGAGCGGCCCCTGGGCACCACCAGAAAACATTTGTGAGTGAACGTGGAGTGATGACCATGTGGACACTGTCTTTCCAGGGTTTCTTGGAGCCTCTGCAGAGTCTGGGGGCCAGGCTTCTTAGTGGAAACTGCAGGATCTTCCTTCTGACCCCTGCTTGCCTCGCCCCAGCAGCTCCGGTTGAGTCCACAGATGCCAGCTCAGCTTCCAGCTTGGGGAAGAGTGGGGTTGTCAGCAGGAGAGCCTGAGGGCTGAGGCCCAGCGTGAACATGGCAGCTAATGGGGACTCTCCCCCATGGTCCCCGGCCCTGGCTGCAGAGGGACGTGGCAGCTCATGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000147124-0-1,1-1-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.526
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGAGACGCCGAGTGTTTCC
R:
CCACATGGTCATCACTCCACG
Band lengths:
114-143
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)