HsaALTD0007442-1/2 @ hg19
Alternative 5'ss
Gene
ENSG00000147124 | ZNF41
Description
zinc finger protein 41 [Source:HGNC Symbol;Acc:13107]
Coordinates
chrX:47315671-47326947:-
Coord C1 exon
chrX:47326809-47326947
Coord A exon
NA
Coord C2 exon
chrX:47315671-47315797
Length
0 bp
Sequences
Splice sites
5' ss Seq
GAGGTGAGG
5' ss Score
8.41
3' ss Seq
ACAGCATTGTGTCGTTACAGGCT
3' ss Score
6.55
Exon sequences
Seq C1 exon
AGCTTCCAGCTTGGGGAAGAGTGGGGTTGTCAGCAGGAGAGCCTGAGGGCTGAGGCCCAGCGTGAACATGGCAGCTAATGGGGACTCTCCCCCATGGTCCCCGGCCCTGGCTGCAGAGGGACGTGGCAGCTCATGTGAG
Seq A exon
NA
Seq C2 exon
GCTTCAGTGTCATTTGAGGACGTGACTGTGGACTTCAGCAAGGAGGAGTGGCAGCACTTGGACCCTGCCCAGAGACGCCTGTACTGGGATGTGACACTAGAGAACTACAGCCACCTGCTCTCAGTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000147124-4-4,5-4-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.467 A=NA C2=0.016
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF0135222=KRAB=WD(100=95.3)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAGAGTGGGGTTGTCAGCAG
R:
TCCTCCTTGCTGAAGTCCACA
Band lengths:
171-257
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)